Literature DB >> 28510234

Deriving biomedical diagnostics from NMR spectroscopic data.

Ian C P Smith1, Ray L Somorjai2.   

Abstract

Biomedical spectroscopic experiments generate large volumes of data. For accurate, robust diagnostic tools the data must be analyzed for only a few characteristic observations per subject, and a large number of subjects must be studied. We describe here two of the current data analytic approaches applied to this problem: SIMCA (principal component analysis, partial least squares), and the statistical classification strategy (SCS). We demonstrate the application of the SCS by three examples of its use in analyzing 1H NMR spectra: screening for colon cancer, characterization of thyroid cancer, and distinguishing cancer from cholangitis in the biliary tract.

Entities:  

Keywords:  1H NMR spectra; Biomedical spectroscopy; Cancer screening; Soft independent modelling of class analogies (SIMCA); Statistical classification strategy (SCS)

Year:  2011        PMID: 28510234      PMCID: PMC5418393          DOI: 10.1007/s12551-011-0045-8

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  5 in total

1.  Mapping high-dimensional data onto a relative distance plane--an exact method for visualizing and characterizing high-dimensional patterns.

Authors:  R L Somorjai; B Dolenko; A Demko; M Mandelzweig; A E Nikulin; R Baumgartner; N J Pizzi
Journal:  J Biomed Inform       Date:  2004-10       Impact factor: 6.317

2.  Detection of cholangiocarcinoma with magnetic resonance spectroscopy of bile in patients with and without primary sclerosing cholangitis.

Authors:  N Albiin; I C P Smith; U Arnelo; B Lindberg; A Bergquist; B Dolenko; N Bryksina; T Bezabeh
Journal:  Acta Radiol       Date:  2008-10       Impact factor: 1.990

3.  Near-optimal region selection for feature space reduction: novel preprocessing methods for classifying MR spectra.

Authors:  A E Nikulin; B Dolenko; T Bezabeh; R L Somorjai
Journal:  NMR Biomed       Date:  1998 Jun-Aug       Impact factor: 4.044

4.  Computerized consensus diagnosis: a classification strategy for the robust analysis of MR spectra. I. Application to 1H spectra of thyroid neoplasms.

Authors:  R L Somorjai; A E Nikulin; N Pizzi; D Jackson; G Scarth; B Dolenko; H Gordon; P Russell; C L Lean; L Delbridge
Journal:  Magn Reson Med       Date:  1995-02       Impact factor: 4.668

5.  Detecting colorectal cancer by 1H magnetic resonance spectroscopy of fecal extracts.

Authors:  T Bezabeh; R Somorjai; B Dolenko; N Bryskina; B Levin; C N Bernstein; E Jeyarajah; A H Steinhart; D T Rubin; I C P Smith
Journal:  NMR Biomed       Date:  2009-07       Impact factor: 4.044

  5 in total
  2 in total

Review 1.  Clinical proton MR spectroscopy in central nervous system disorders.

Authors:  Gülin Oz; Jeffry R Alger; Peter B Barker; Robert Bartha; Alberto Bizzi; Chris Boesch; Patrick J Bolan; Kevin M Brindle; Cristina Cudalbu; Alp Dinçer; Ulrike Dydak; Uzay E Emir; Jens Frahm; Ramón Gilberto González; Stephan Gruber; Rolf Gruetter; Rakesh K Gupta; Arend Heerschap; Anke Henning; Hoby P Hetherington; Franklyn A Howe; Petra S Hüppi; Ralph E Hurd; Kantarci Kantarci; Dennis W J Klomp; Roland Kreis; Marijn J Kruiskamp; Martin O Leach; Alexander P Lin; Peter R Luijten; Malgorzata Marjańska; Andrew A Maudsley; Dieter J Meyerhoff; Carolyn E Mountford; Sarah J Nelson; M Necmettin Pamir; Jullie W Pan; Andrew C Peet; Harish Poptani; Stefan Posse; Petra J W Pouwels; Eva-Maria Ratai; Brian D Ross; Tom W Scheenen; Christian Schuster; Ian C P Smith; Brian J Soher; Ivan Tkáč; Daniel B Vigneron; Risto A Kauppinen
Journal:  Radiology       Date:  2014-03       Impact factor: 11.105

Review 2.  MRS-based Metabolomics in Cancer Research.

Authors:  Tedros Bezabeh; Omkar B Ijare; Alexander E Nikulin; Rajmund L Somorjai; Ian Cp Smith
Journal:  Magn Reson Insights       Date:  2014-02-13
  2 in total

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