Literature DB >> 28510004

Non fitting based FRET-FLIM analysis approaches applied to quantify protein-protein interactions in live cells.

Sergi Padilla-Parra1, Nicolas Auduge2, Maite Coppey-Moisan2, Marc Tramier3,4,5.   

Abstract

New imaging methodologies in quantitative fluorescence microscopy and nanoscopy have been developed in the last few years and are beginning to be extensively applied to biological problems, such as the localization and quantification of protein interactions. Fluorescence resonance energy transfer (FRET) detected by fluorescence lifetime imaging microscopy (FLIM) is currently employed not only in biophysics or chemistry but also in bio-medicine, thanks to new advancements in technology and also new developments in data treatment. FRET-FLIM can be a very useful tool to ascertain protein interactions occurring in single living cells. In this review, we stress the importance of increasing the acquisition speed when working in vivo employing Time-Domain FLIM. The development of the new mathematical-based non-fitting methods allows the determining of the fraction of interacting donor without the requirement of high count statistics, and thus allows the performing of high speed acquisitions in FRET-FLIM to still be quantitative.

Entities:  

Keywords:  Fluorescence lifetime imaging microscopy (FLIM); Förster resonance energy transfer (FRET); Nanoscopy; Quantitative fluorescence microscopy

Year:  2011        PMID: 28510004      PMCID: PMC5418398          DOI: 10.1007/s12551-011-0047-6

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  37 in total

1.  Tracking the interactions of rRNA processing proteins during nucleolar assembly in living cells.

Authors:  Nicole Angelier; Marc Tramier; Emilie Louvet; Maïté Coppey-Moisan; Tula M Savino; Jan R De Mey; Danièle Hernandez-Verdun
Journal:  Mol Biol Cell       Date:  2005-04-06       Impact factor: 4.138

2.  Rapid frequency-domain FLIM spinning disk confocal microscope: lifetime resolution, image improvement and wavelet analysis.

Authors:  Chittanon Buranachai; Daichi Kamiyama; Akira Chiba; Benjamin D Williams; Robert M Clegg
Journal:  J Fluoresc       Date:  2008-03-07       Impact factor: 2.217

3.  Global analysis of time correlated single photon counting FRET-FLIM data.

Authors:  Hernan E Grecco; Pedro Roda-Navarro; Peter J Verveer
Journal:  Opt Express       Date:  2009-04-13       Impact factor: 3.894

4.  Dynamic interaction of amphiphysin with N-WASP regulates actin assembly.

Authors:  Hiroshi Yamada; Sergi Padilla-Parra; Sun-Joo Park; Toshiki Itoh; Mathilde Chaineau; Ilaria Monaldi; Ottavio Cremona; Fabio Benfenati; Pietro De Camilli; Maïté Coppey-Moisan; Marc Tramier; Thierry Galli; Kohji Takei
Journal:  J Biol Chem       Date:  2009-09-16       Impact factor: 5.157

Review 5.  Visualizing protein interactions in living cells using digitized GFP imaging and FRET microscopy.

Authors:  A Periasamy; R N Day
Journal:  Methods Cell Biol       Date:  1999       Impact factor: 1.441

6.  Error analysis of the rapid lifetime determination method for double-exponential decays and new windowing schemes.

Authors:  K K Sharman; A Periasamy; H Ashworth; J N Demas
Journal:  Anal Chem       Date:  1999-03-01       Impact factor: 6.986

7.  Precise measurement of protein interacting fractions with fluorescence lifetime imaging microscopy.

Authors:  Kirstin A Walther; Björn Papke; Maja B Sinn; Kirsten Michel; Ali Kinkhabwala
Journal:  Mol Biosyst       Date:  2011-01-10

8.  Transient digitizer for the determination of microsecond luminescence lifetimes.

Authors:  R J Woods; S Scypinski; L J Love; H A Ashworth
Journal:  Anal Chem       Date:  1984-07       Impact factor: 6.986

9.  Directed evolution of a monomeric, bright and photostable version of Clavularia cyan fluorescent protein: structural characterization and applications in fluorescence imaging.

Authors:  Hui-wang Ai; J Nathan Henderson; S James Remington; Robert E Campbell
Journal:  Biochem J       Date:  2006-12-15       Impact factor: 3.857

10.  Activation of CaMKII in single dendritic spines during long-term potentiation.

Authors:  Seok-Jin R Lee; Yasmin Escobedo-Lozoya; Erzsebet M Szatmari; Ryohei Yasuda
Journal:  Nature       Date:  2009-03-19       Impact factor: 49.962

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  5 in total

1.  In vitro and in vivo phasor analysis of stoichiometry and pharmacokinetics using short-lifetime near-infrared dyes and time-gated imaging.

Authors:  Sez-Jade Chen; Nattawut Sinsuebphon; Alena Rudkouskaya; Margarida Barroso; Xavier Intes; Xavier Michalet
Journal:  J Biophotonics       Date:  2018-12-09       Impact factor: 3.207

2.  Structure dynamics of HIV-1 Env trimers on native virions engaged with living T cells.

Authors:  Irene Carlon-Andres; Tomas Malinauskas; Sergi Padilla-Parra
Journal:  Commun Biol       Date:  2021-10-27

3.  Spatio-Temporal Quantification of FRET in living cells by fast time-domain FLIM: a comparative study of non-fitting methods [corrected].

Authors:  Aymeric Leray; Sergi Padilla-Parra; Julien Roul; Laurent Héliot; Marc Tramier
Journal:  PLoS One       Date:  2013-07-18       Impact factor: 3.240

4.  Quantitative real-time imaging of intracellular FRET biosensor dynamics using rapid multi-beam confocal FLIM.

Authors:  James A Levitt; Simon P Poland; Nikola Krstajic; Karin Pfisterer; Ahmet Erdogan; Paul R Barber; Maddy Parsons; Robert K Henderson; Simon M Ameer-Beg
Journal:  Sci Rep       Date:  2020-03-20       Impact factor: 4.379

5.  Wide-field time-gated SPAD imager for phasor-based FLIM applications.

Authors:  Arin Ulku; Andrei Ardelean; Michel Antolovic; Shimon Weiss; Edoardo Charbon; Claudio Bruschini; Xavier Michalet
Journal:  Methods Appl Fluoresc       Date:  2020-02-05       Impact factor: 3.009

  5 in total

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