Literature DB >> 28509960

Pathological implications of nucleic acid interactions with proteins associated with neurodegenerative diseases.

Yraima Cordeiro1,2, Bruno Macedo3, Jerson L Silva4, Mariana P B Gomes3.   

Abstract

Protein misfolding disorders (PMDs) refer to a group of diseases related to the misfolding of particular proteins that aggregate and deposit in the cells and tissues of humans and other mammals. The mechanisms that trigger protein misfolding and aggregation are still not fully understood. Increasing experimental evidence indicates that abnormal interactions between PMD-related proteins and nucleic acids (NAs) can induce conformational changes. Here, we discuss these protein-NA interactions and address the role of deoxyribonucleic (DNA) and ribonucleic (RNA) acid molecules in the conformational conversion of different proteins that aggregate in PMDs, such as Alzheimer's, Parkinson's, and prion diseases. Studies on the affinity, stability, and specificity of proteins involved in neurodegenerative diseases and NAs are specifically addressed. A landscape of reciprocal effects resulting from the binding of prion proteins, amyloid-β peptides, tau proteins, huntingtin, and α-synuclein are presented here to clarify the possible role of NAs, not only as encoders of genetic information but also in triggering PMDs.

Entities:  

Keywords:  Conformational conversion; Degenerative diseases; Protein aggregation; Protein misfolding; Protein–nucleic acid interaction

Year:  2014        PMID: 28509960      PMCID: PMC5425713          DOI: 10.1007/s12551-013-0132-0

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  130 in total

1.  Analysis of the subcellular localization of huntingtin with a set of rabbit polyclonal antibodies in cultured mammalian cells of neuronal origin: comparison with the distribution of huntingtin in Huntington's disease autopsy brain.

Authors:  J C Dorsman; M A Smoor; M L Maat-Schieman; M Bout; S Siesling; S G van Duinen; J J Verschuuren; J T den Dunnen; R A Roos; G J van Ommen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1999-06-29       Impact factor: 6.237

2.  Nuclear localization of alpha-synuclein and its interaction with histones.

Authors:  John Goers; Amy B Manning-Bog; Alison L McCormack; Ian S Millett; Sebastian Doniach; Donato A Di Monte; Vladimir N Uversky; Anthony L Fink
Journal:  Biochemistry       Date:  2003-07-22       Impact factor: 3.162

3.  Cognate DNA stabilizes the tumor suppressor p53 and prevents misfolding and aggregation.

Authors:  Daniella Ishimaru; Ana Paula D Ano Bom; Luís Maurício T R Lima; Pablo A Quesado; Marcos F C Oyama; Claudia V de Moura Gallo; Yraima Cordeiro; Jerson L Silva
Journal:  Biochemistry       Date:  2009-07-07       Impact factor: 3.162

4.  Aggregation of huntingtin in neuronal intranuclear inclusions and dystrophic neurites in brain.

Authors:  M DiFiglia; E Sapp; K O Chase; S W Davies; G P Bates; J P Vonsattel; N Aronin
Journal:  Science       Date:  1997-09-26       Impact factor: 47.728

Review 5.  The molecular biology of Huntington's disease.

Authors:  L W Ho; J Carmichael; J Swartz; A Wyttenbach; J Rankin; D C Rubinsztein
Journal:  Psychol Med       Date:  2001-01       Impact factor: 7.723

Review 6.  Protein-DNA interaction at the origin of neurological diseases: a hypothesis.

Authors:  Juan S Jiménez
Journal:  J Alzheimers Dis       Date:  2010       Impact factor: 4.472

7.  Evidence that the 42- and 40-amino acid forms of amyloid beta protein are generated from the beta-amyloid precursor protein by different protease activities.

Authors:  M Citron; T S Diehl; G Gordon; A L Biere; P Seubert; D J Selkoe
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-12       Impact factor: 11.205

8.  α-Synuclein occurs physiologically as a helically folded tetramer that resists aggregation.

Authors:  Tim Bartels; Joanna G Choi; Dennis J Selkoe
Journal:  Nature       Date:  2011-08-14       Impact factor: 49.962

9.  Characterization of 2'-fluoro-RNA aptamers that bind preferentially to disease-associated conformations of prion protein and inhibit conversion.

Authors:  Alexandre Rhie; Louise Kirby; Natalie Sayer; Rosanna Wellesley; Petra Disterer; Ian Sylvester; Andrew Gill; James Hope; William James; Abdessamad Tahiri-Alaoui
Journal:  J Biol Chem       Date:  2003-08-05       Impact factor: 5.157

10.  Prion protein complexed to N2a cellular RNAs through its N-terminal domain forms aggregates and is toxic to murine neuroblastoma cells.

Authors:  Mariana P B Gomes; Thiago A Millen; Priscila S Ferreira; Narcisa L Cunha e Silva; Tuane C R G Vieira; Marcius S Almeida; Jerson L Silva; Yraima Cordeiro
Journal:  J Biol Chem       Date:  2008-05-01       Impact factor: 5.157

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  11 in total

1.  Distinct modulatory role of RNA in the aggregation of the tumor suppressor protein p53 core domain.

Authors:  Petar Stefanov Kovachev; Debapriya Banerjee; Luciana Pereira Rangel; Jonny Eriksson; Murilo M Pedrote; Mafalda Maria D C Martins-Dinis; Katarina Edwards; Yraima Cordeiro; Jerson L Silva; Suparna Sanyal
Journal:  J Biol Chem       Date:  2017-04-18       Impact factor: 5.157

2.  Probing TDP-43 condensation using an in silico designed aptamer.

Authors:  Elsa Zacco; Owen Kantelberg; Edoardo Milanetti; Alexandros Armaos; Francesco Paolo Panei; Jenna Gregory; Kiani Jeacock; David J Clarke; Siddharthan Chandran; Giancarlo Ruocco; Stefano Gustincich; Mathew H Horrocks; Annalisa Pastore; Gian Gaetano Tartaglia
Journal:  Nat Commun       Date:  2022-06-23       Impact factor: 17.694

3.  Nuclear alpha-synuclein is present in the human brain and is modified in dementia with Lewy bodies.

Authors:  David J Koss; Daniel Erskine; Andrew Porter; Pawel Palmoski; Hariharan Menon; Olivia G J Todd; Marta Leite; Johannes Attems; Tiago F Outeiro
Journal:  Acta Neuropathol Commun       Date:  2022-07-06       Impact factor: 7.578

Review 4.  The "Jekyll and Hyde" Actions of Nucleic Acids on the Prion-like Aggregation of Proteins.

Authors:  Jerson L Silva; Yraima Cordeiro
Journal:  J Biol Chem       Date:  2016-06-10       Impact factor: 5.157

5.  "Protein aggregates" contain RNA and DNA, entrapped by misfolded proteins but largely rescued by slowing translational elongation.

Authors:  Robert J Shmookler Reis; Ramani Atluri; Meenakshisundaram Balasubramaniam; Jay Johnson; Akshatha Ganne; Srinivas Ayyadevara
Journal:  Aging Cell       Date:  2021-03-31       Impact factor: 9.304

6.  RNA as a key factor in driving or preventing self-assembly of the TAR DNA-binding protein 43.

Authors:  Elsa Zacco; Ricardo Graña-Montes; Stephen R Martin; Natalia Sanchez de Groot; Caterina Alfano; Gian Gaetano Tartaglia; Annalisa Pastore
Journal:  J Mol Biol       Date:  2019-02-08       Impact factor: 5.469

Review 7.  Effect of the micro-environment on α-synuclein conversion and implication in seeded conversion assays.

Authors:  Niccolo Candelise; Matthias Schmitz; Katrin Thüne; Maria Cramm; Alberto Rabano; Saima Zafar; Erik Stoops; Hugo Vanderstichele; Anna Villar-Pique; Franc Llorens; Inga Zerr
Journal:  Transl Neurodegener       Date:  2020-01-17       Impact factor: 8.014

Review 8.  Unraveling Prion Protein Interactions with Aptamers and Other PrP-Binding Nucleic Acids.

Authors:  Bruno Macedo; Yraima Cordeiro
Journal:  Int J Mol Sci       Date:  2017-05-17       Impact factor: 5.923

9.  Bacterial DNA promotes Tau aggregation.

Authors:  George Tetz; Michelle Pinho; Sandra Pritzkow; Nicolas Mendez; Claudio Soto; Victor Tetz
Journal:  Sci Rep       Date:  2020-02-11       Impact factor: 4.379

10.  ProNAB: database for binding affinities of protein-nucleic acid complexes and their mutants.

Authors:  Kannan Harini; Ambuj Srivastava; Arulsamy Kulandaisamy; M Michael Gromiha
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

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