| Literature DB >> 28499373 |
Ling Xiao1, Jianghong Yuan2, Qiuming Yao1, Ni Yan1, Ronghua Song1, Wenjuan Jiang1, Danfeng Li1, Liangfeng Shi1, Jin-An Zhang3.
Abstract
BACKGROUND: Selenium is an essential trace and there is a high selenium concentration in the thyroid gland. Selenium deficiency may impair the thyroid function. The aim of this study was to investigate the association between three selenoprotein genes polymorphisms and autoimmune thyroid diseases.Entities:
Keywords: Autoimmune thyroid disease (AITD); Glutathione peroxidase 4 gene (GPX4); Selenoprotein P gene (SELENOP); Selenoprotein S gene (SELENOS); Single-nucleotide polymorphisms (SNPs)
Mesh:
Substances:
Year: 2017 PMID: 28499373 PMCID: PMC5429515 DOI: 10.1186/s12881-017-0415-6
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Clinical data of AITD patients and controls
| GD | HT | Control | |
|---|---|---|---|
| Number | 701 | 359 | 938 |
| Gender | |||
| Female | 487 | 315 | 629 |
| Male | 214 | 44 | 309 |
| Age | 36.88 ± 14.56 | 35.01 ± 13.81 | 38.75 ± 9.14 |
| Onset of age | 33.86 ± 14.36 | 32.63 ± 13.44 | |
| Thyroid size | |||
| Normal | 25 | 13 | 938 |
| I | 133 | 63 | |
| II | 429 | 247 | |
| III | 114 | 36 | |
| Family history | |||
| (+) | 145 | 72 | |
| (−) | 501 | 273 | 938 |
| Ophthalmopathy | |||
| (+) | 154 | 6 | |
| (−) | 547 | 353 | |
| Hypothyroidism | |||
| (+) | 184 | ||
| (−) | 175 | ||
Hardy-Weinberg P value of the six SNPs
| SNP ID | Control | GD | HT |
|---|---|---|---|
| rs6865453 | 0.2189 | 0.4966 | 0.0933 |
| Rs713041 | 0.5782 | 0.5330 | 0.3827 |
| Rs2074451 | 0.8859 | 0.6388 | 0.1908 |
| Rs3746165 | 0.6388 | 0.8765 | 0.0829 |
| Rs28665122 | 0.0576 | 0.9438 | 0.0546 |
| Rs7178239 | 0.7108 | 0.9519 | 0.7774 |
Allele and genotype frequencies in AITD patients and controls
| GENE | SNP | Alleles | Con (%) | GD (%) | P | Adjusted OR (95%CI) | HT (%) | P | Adjusted OR (95%CI) |
|---|---|---|---|---|---|---|---|---|---|
| Sepp1 | rs6865453 | A | 1338 (74.5) | 983 (72.8) | 0.307 | 0.918 (0.779–1.081) | 514 (74.1) | 0.813 | 0.975 (0.791–1.201) |
| C | 458 (25.5) | 367 (27.2) | 180 (25.9) | ||||||
| AA | 491 (54.7) | 354 (52.4) | 0.403 | 0.918 (0.751–1.122) | 184 (53.03) | 0.605 | 0.936 (0.727–1.203) | ||
| AC + CC | 407 (45.3) | 321 (47.6) | 163 (47.0) | ||||||
| GPX4 | rs713041 | C | 1031 (57.4) | 751 (55.6) | 0.329 | 0.932 (0.809–1.073) | 390 (56.2) | 0.739 | 0.970 (0.810–1.160) |
| T | 765 (42.6) | 599 (44.37) | 304 (43.8) | ||||||
| CC | 300 (33.4) | 213 (31.6) | 0.418 | 0.915 (0.739–1.133) | 105 (30.3) | 0.370 | 0.883 (0.674–1.158) | ||
| CT + TT | 598 (66.6) | 462 (68.5) | 242 (69.7) | ||||||
| rs2074451 | G | 1004 (56.0) | 738 (55.2) | 0.698 | 0.972 (0.843–1.120) | 375 (54.66) | 0.713 | 0.966 (0.806–1.158) | |
| T | 790 (44.0) | 598 (44.8) | 311 (45.3) | ||||||
| GG | 292 (31.4) | 207 (31.0) | 0.833 | 0.977 (0.786–1.213) | 96 (27.99) | 0.343 | 0.874 (0.662–1.154) | ||
| GT + TT | 615 (68.6) | 451 (69.0) | 247 (72.0) | ||||||
| rs3746165 | C | 1019 (56.7) | 738 (54. 7) | 0.259 | 0.921 (0.798)–1.062) | 384 (55.33) | 0.625 | 0.955 (0.796–1.146) | |
| T | 777 (43.3) | 612 (45.3) | 310 (44.7) | ||||||
| CC | 287 (32.0) | 203 (30.1) | 0.416 | 0.914 (0.736–1.135) | 98 (28.24) | 0.272 | 0.857 (0.650–1.129) | ||
| CT + TT | 611 (68.0) | 472 (70.0) | 249 (71.8) | ||||||
| SEPS1 | rs28665122 | C | 1688 (93.5) | 1267 (94.4) | 0.297 | 1.168 (0.872–1.566) | 668 (95.16) | 0.148 | 1.325 (0.904–1.943) |
| T | 118 (6.5) | 75 (5.6) | 34 (4.8) | ||||||
| CC | 793 (87.8) | 598 (89.1) | 0.432 | 1.134 (0.828–1.554) | 320 (91.2) | 0.104 | 1.420 (0.930–21.67) | ||
| CT + TT | 110 (12.2) | 73 (10.9) | 31 (8.8) | ||||||
| rs7178239 | G | 802 (45.6) | 620 (46.9) | 0.496 | 1.051 (0.910–1.214) | 291 (42.4) | 0.167 | 0.881 (0.735–1.054) | |
| C | 958 (54.4) | 702 (53.1) | 395 (57.6) | ||||||
| GG | 180 (20.5) | 145 (21.9) | 0.514 | 1.085 (0.848–1.389) | 63 (18.4) | 0.370 | 0.863 (0.625–1.190) | ||
| CG + CC | 700 (79.6) | 516 (78.1) | 280 (81.6) |
Allele and genotype frequencies in GD patients with or without ophthalmopathy and controls
| GENE | SNP | Alleles | Con (%) | GO (%) | P | non-GO (%) | P | P (GO/non-GO) |
|---|---|---|---|---|---|---|---|---|
| Sepp1 | rs6865453 | A | 1338 (74.5) | 173 (72.08) | 0.380 | 710 (73.20) | 0.462 | 0.7456 |
| C | 458 (25.5) | 67 (27.92) | 260 (26.80) | |||||
| AA | 491 (54.68) | 63 (52.5) | 257 (52.99) | |||||
| AC | 356 (39.64) | 47 (39.17) | 196 (40.41) | |||||
| CC | 51 (5.68) | 10 (8.33) | 32 (6.60) | |||||
| GPX4 | rs713041 | C | 1031 (57.41) | 136 (56.67) | 0.814 | 540 (55.67) | 0.410 | 0.8277 |
| T | 765 (42.59) | 104 (43.33) | 430 (44.33) | |||||
| CC | 300 (33.41) | 35 (29.17) | 156 (32.16) | |||||
| CT | 431 (48) | 66 (55) | 228 (47.01) | |||||
| TT | 167 (18.6) | 19 (15.83) | 101 (20.83) | |||||
| rs2074451 | G | 1004 (55.96) | 131 (55.51) | 0.867 | 531 (55.31) | 0.795 | 1 | |
| T | 790 (44.04) | 105 (44.49) | 429 (44.69) | |||||
| GG | 292 (31.44) | 33 (27.97) | 152 (31.67) | |||||
| GT | 440 (49.05) | 65 (55.08) | 227 (47.29) | |||||
| TT | 175 (19.51) | 20 (16.95) | 101 (21.04) | |||||
| rs3746165 | C | 1019 (56.74) | 128 (53.33) | 0.290 | 537 (55.36) | 0.541 | 0.6121 | |
| T | 777 (43.26) | 112 (46.67) | 433 (44.64) | |||||
| CC | 287 (31.96) | 31 (25.83) | 152 (31.34) | |||||
| CT | 445 (49.55) | 66 (55) | 233 (48.04) | |||||
| TT | 166 (18.49) | 23 (19.17) | 100 (20.62) | |||||
| SEPS1 | rs28665122 | C | 1688 (93.47) | 225 (93.75) | 0.887 | 909 (94.69) | 0.228 | 0.5304 |
| T | 118 (6.53) | 15 (6.25) | 51 (5.31) | |||||
| CC | 793 (87.82) | 105 (87.5) | 430 (89.58) | |||||
| CT | 102 (11.3) | 15 (1.25) | 49 (10.21) | |||||
| TT | 8 (0.9) | 0 (0) | 1 (0.21) | |||||
| rs7178239 | G | 802 (45.57) | 117 (50.87) | 0.121 | 443 (46.53) | 0.711 | 0.2401 | |
| C | 958 (54.43) | 113 (49.13) | 509 (53.47) | |||||
| GG | 180 (20.45) | 30 (26.09) | 102 (21.43) | |||||
| CG | 442 (50.23) | 57 (49.57) | 239 (50.21) | |||||
| CC | 258 (29.32) | 28 (24.34) | 135 (28.36) |
Allele and genotype frequencies in HT patients with hypothyroidism or euthyroidism and controls
| GENE | SNP | Alleles | Con (%) | HT-hypo (%) | P | HT-eu (%) | P | P (Eu/hypo) |
|---|---|---|---|---|---|---|---|---|
| SEPS1 | rs28665122 | C | 1688 (93.47) | 344 (95.56) | 0.183 | 204 (93.58) | 0.914 | 0.335 |
| T | 118 (6.53) | 16 (4.44) | 14 (6.42) | |||||
| CC | 793 (87.82) | 165 (91.67) | 97 (88.99) | |||||
| CT | 102 (11.3) | 14 (7.78) | 10 (9.17) | |||||
| TT | 8 (0.9) | 1 (0.55) | 2 (1.84) | |||||
| rs7178239 | G | 802 (45.57) | 148 (42.05) | 0.204 | 90 (42.86) | 0.414 | 0.860 | |
| C | 958 (54.43) | 204 (57.95) | 120 (57.14) | |||||
| GG | 180 (20.45) | 32 (18.18) | 22 (20.95) | |||||
| CG | 442 (50.23) | 84 (47.73) | 46 (43.80) | |||||
| CC | 258 (29.32) | 60 (34.09) | 37 (35.25) | |||||
| Sepp1 | rs6865453 | A | 1338 (74.5) | 271 (75.70) | 0.585 | 158 (73.83) | 0.853 | 0.619 |
| C | 458 (25.5) | 87 (24.30) | 56 (26.17) | |||||
| AA | 491 (54.68) | 99 (55.31) | 54 (50.47) | |||||
| AC | 356 (39.64) | 73 (40.78) | 50 (46.73) | |||||
| CC | 51 (5.68) | 7 (3.91) | 3 (2.80) | |||||
| GPX4 | rs713041 | C | 1031 (57.41) | 208 (58.10) | 0.694 | 117 (54.67) | 0.500 | 0.433 |
| T | 765 (42.59) | 150 (41.90) | 97 (45.33) | |||||
| CC | 300 (33.41) | 59 (32.96) | 29 (27.10) | |||||
| CT | 431 (48) | 90 (50.28) | 59 (55.14) | |||||
| TT | 167 (18.6) | 30 (16.76) | 19 (17.76) | |||||
| rs2074451 | G | 1004 (55.96) | 200 (56.50) | 0.725 | 110 (52.38) | 0.401 | 0.381 | |
| T | 790 (44.04) | 154 (43.50) | 100 (47.62) | |||||
| GG | 292 (31.44) | 53 (29.94) | 25 (23.81) | |||||
| GT | 440 (49.05) | 94 (53.11) | 60 (57.14) | |||||
| TT | 175 (19.51) | 30 (16.95) | 20 (19.05) | |||||
| rs3746165 | C | 1019 (56.74) | 204 (56.98) | 0.816 | 114 (53.27) | 0.399 | 0.434 | |
| T | 777 (43.26) | 154 (43.02) | 100 (46.73) | |||||
| CC | 287 (31.96) | 55 (30.73) | 26 (24.30) | |||||
| CT | 445 (49.55) | 94 (52.51) | 62 (57.94) | |||||
| TT | 166 (18.49) | 30 (16.76) | 19 (17.76) |
Allele and genotype frequencies in GD patients with or without family history and controls
| GENE | SNP | Alleles | Con (%) | GD-FH (%) | P | GD non-FH (%) | P | P (FH/non-FH) |
|---|---|---|---|---|---|---|---|---|
| Sepp1 | rs6865453 | A | 1338 (74.5) | 206 (75.18) | 0.675 | 694 (71.55) | 0.089 | 0.2517 |
| C | 458 (25.5) | 68 (24.82) | 276 (28.45) | |||||
| AA | 491 (54.68) | 77 (56.20) | 245 (50.52) | |||||
| AC | 356 (39.64) | 52 (37.96) | 204 (42.06) | |||||
| CC | 51 (5.68) | 8 (5.84) | 36 (7.42) | |||||
| GPX4 | rs713041 | C | 1031 (57.41) | 151 (55.11) | 0.511 | 540 (55.67) | 0.393 | 0.8906 |
| T | 765 (42.59) | 123 (44.89) | 430 (44.33) | |||||
| CC | 300 (33.41) | 39 (28.47) | 155 (31.96) | |||||
| CT | 431 (48) | 73 (53.28) | 230 (47.42) | |||||
| TT | 167 (18.6) | 25 (18.25) | 100 (20.62) | |||||
| rs2074451 | G | 1004 (55.96) | 150 (55.56) | 0.980 | 529 (55.10) | 0.680 | 0.9448 | |
| T | 790 (44.04) | 120 (44.44) | 431 (44.90) | |||||
| GG | 292 (31.44) | 39 (28.89) | 149 (31.04) | |||||
| GT | 440 (49.05) | 72 (53.33) | 231 (48.13) | |||||
| TT | 175 (19.51) | 24 (17.78) | 100 (20.83) | |||||
| rs3746165 | C | 1019 (56.74) | 146 (53.28) | 0.353 | 535 (55.15) | 0.438 | 0.5833 | |
| T | 777 (43.26) | 128 (46.72) | 435 (44.85) | |||||
| CC | 287 (31.96) | 36 (26.28) | 150 (30.93) | |||||
| CT | 445 (49.55) | 74 (50.01) | 235 (48.45) | |||||
| TT | 166 (18.49) | 27 (19.71) | 100 (20.62) | |||||
| SEPS1 | rs28665122 | C | 1688 (93.47) | 265 (95.32) | 0.244 | 907 (94.87) | 0.161 | 0.8764 |
| T | 118 (6.53) | 13 (4.68) | 49 (5.13) | |||||
| CC | 793 (87.82) | 126 (90.65) | 431 (90.17) | |||||
| CT | 102 (11.3) | 13 (9.35) | 45 (9.41) | |||||
| TT | 8 (0.9) | 0 (0) | 2 (0.42) | |||||
| rs7178239 | G | 802 (45.57) | 119 (44.40) | 0.609 | 443 (46.83) | 0.542 | 0.4886 | |
| C | 958 (54.43) | 149 (55.60) | 503 (53.17) | |||||
| GG | 180 (20.45) | 27 (20.15) | 101 (21.35) | |||||
| CG | 442 (50.23) | 65 (48.51) | 241 (50.95) | |||||
| CC | 258 (29.32) | 42 (31.34) | 131 (27.70) |