Literature DB >> 28497822

B-DNA model systems in non-terran bio-solvents: implications for structure, stability and replication.

Trevor A Hamlin1, Jordi Poater, Célia Fonseca Guerra, F Matthias Bickelhaupt.   

Abstract

We have computationally analyzed a comprehensive series of Watson-Crick and mismatched B-DNA base pairs, in the gas phase and in several solvents, including toluene, chloroform, ammonia, methanol and water, using dispersion-corrected density functional theory and implicit solvation. Our analyses shed light on how the molecular-recognition machinery behind life's genetic code depends on the medium, in order to contribute to our understanding of the possibility or impossibility for life to exist on exoplanetary bodies. Calculations show how a common non-terran environment like ammonia, less polar than water, exhibits stronger hydrogen-bonding affinities, although showing reduced selectivities towards the correct incorporation of Watson-Crick base pairs into the backbone. Thus, we prove the viability of DNA replication in a non-terran environment.

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Year:  2017        PMID: 28497822     DOI: 10.1039/c7cp01908d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  7 in total

1.  Molecular Mechanisms of DNA Replication and Repair Machinery: Insights from Microscopic Simulations.

Authors:  Christopher Maffeo; Han-Yi Chou; Aleksei Aksimentiev
Journal:  Adv Theory Simul       Date:  2019-02-12

2.  RNA versus DNA G-Quadruplex: The Origin of Increased Stability.

Authors:  Francesco Zaccaria; Célia Fonseca Guerra
Journal:  Chemistry       Date:  2018-10-23       Impact factor: 5.236

3.  Secondary Electrostatic Interaction Model Revised: Prediction Comes Mainly from Measuring Charge Accumulation in Hydrogen-Bonded Monomers.

Authors:  Stephanie C C van der Lubbe; Francesco Zaccaria; Xiaobo Sun; Célia Fonseca Guerra
Journal:  J Am Chem Soc       Date:  2019-03-07       Impact factor: 15.419

4.  Can Polarity-Inverted Surfactants Self-Assemble in Nonpolar Solvents?

Authors:  Manuel Carrer; Tatjana Škrbić; Sigbjørn Løland Bore; Giuseppe Milano; Michele Cascella; Achille Giacometti
Journal:  J Phys Chem B       Date:  2020-07-14       Impact factor: 2.991

5.  B-DNA Structure and Stability: The Role of Nucleotide Composition and Order.

Authors:  Celine Nieuwland; Trevor A Hamlin; Célia Fonseca Guerra; Giampaolo Barone; F Matthias Bickelhaupt
Journal:  ChemistryOpen       Date:  2022-01-27       Impact factor: 2.630

6.  How Divalent Cations Interact with the Internal Channel Site of Guanine Quadruplexes.

Authors:  Francesco Zaccaria; Stephanie C C van der Lubbe; Celine Nieuwland; Trevor A Hamlin; Célia Fonseca Guerra
Journal:  Chemphyschem       Date:  2021-09-23       Impact factor: 3.520

7.  Nucleophilic Substitution in Solution: Activation Strain Analysis of Weak and Strong Solvent Effects.

Authors:  Trevor A Hamlin; Bas van Beek; Lando P Wolters; F Matthias Bickelhaupt
Journal:  Chemistry       Date:  2018-03-24       Impact factor: 5.236

  7 in total

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