Literature DB >> 28496994

Novel Causative Variants in DYRK1A, KARS, and KAT6A Associated with Intellectual Disability and Additional Phenotypic Features.

Clark R Murray1, Samantha N Abel1, Matthew B McClure1, Joseph Foster1, Maria I Walke2, Parul Jayakar2, Guney Bademci1, Mustafa Tekin1.   

Abstract

Patients with unclear patterns of developmental and cognitive delay may go years without a definitive diagnosis despite extensive testing due to overlapping phenotypes of many genetic disorders. In this study, we identified causative variants in DYRK1A, KARS, or KAT6A in four individuals with global developmental delay and various findings including microcephaly and sensorineural hearing loss using whole exome sequencing. We present the cognitive, neurologic, and physical findings of four individuals to expand the clinical knowledge of possible features of the phenotypes of three rare genetic disorders. Through this process, we provide support for the use of whole exome sequencing in the setting of severe, intellectual disability or in those in whom a genetic disorder is suspected despite initial negative testing.

Entities:  

Keywords:  ataxia; hearing loss; intellectual disability; microcephaly; seizures

Year:  2017        PMID: 28496994      PMCID: PMC5423827          DOI: 10.1055/s-0037-1598639

Source DB:  PubMed          Journal:  J Pediatr Genet        ISSN: 2146-460X


  25 in total

1.  Compound heterozygosity for loss-of-function lysyl-tRNA synthetase mutations in a patient with peripheral neuropathy.

Authors:  Heather M McLaughlin; Reiko Sakaguchi; Cuiping Liu; Takao Igarashi; Davut Pehlivan; Kristine Chu; Ram Iyer; Pedro Cruz; Praveen F Cherukuri; Nancy F Hansen; James C Mullikin; Leslie G Biesecker; Thomas E Wilson; Victor Ionasescu; Garth Nicholson; Charles Searby; Kevin Talbot; Jeffrey M Vance; Stephan Züchner; Kinga Szigeti; James R Lupski; Ya-Ming Hou; Eric D Green; Anthony Antonellis
Journal:  Am J Hum Genet       Date:  2010-10-08       Impact factor: 11.025

2.  Dominant mutations in KAT6A cause intellectual disability with recognizable syndromic features.

Authors:  Emma Tham; Anna Lindstrand; Avni Santani; Helena Malmgren; Addie Nesbitt; Holly A Dubbs; Elaine H Zackai; Michael J Parker; Francisca Millan; Kenneth Rosenbaum; Golder N Wilson; Ann Nordgren
Journal:  Am J Hum Genet       Date:  2015-02-26       Impact factor: 11.025

3.  Genome sequencing identifies major causes of severe intellectual disability.

Authors:  Christian Gilissen; Jayne Y Hehir-Kwa; Djie Tjwan Thung; Maartje van de Vorst; Bregje W M van Bon; Marjolein H Willemsen; Michael Kwint; Irene M Janssen; Alexander Hoischen; Annette Schenck; Richard Leach; Robert Klein; Rick Tearle; Tan Bo; Rolph Pfundt; Helger G Yntema; Bert B A de Vries; Tjitske Kleefstra; Han G Brunner; Lisenka E L M Vissers; Joris A Veltman
Journal:  Nature       Date:  2014-06-04       Impact factor: 49.962

4.  Range of genetic mutations associated with severe non-syndromic sporadic intellectual disability: an exome sequencing study.

Authors:  Anita Rauch; Dagmar Wieczorek; Elisabeth Graf; Thomas Wieland; Sabine Endele; Thomas Schwarzmayr; Beate Albrecht; Deborah Bartholdi; Jasmin Beygo; Nataliya Di Donato; Andreas Dufke; Kirsten Cremer; Maja Hempel; Denise Horn; Juliane Hoyer; Pascal Joset; Albrecht Röpke; Ute Moog; Angelika Riess; Christian T Thiel; Andreas Tzschach; Antje Wiesener; Eva Wohlleber; Christiane Zweier; Arif B Ekici; Alexander M Zink; Andreas Rump; Christa Meisinger; Harald Grallert; Heinrich Sticht; Annette Schenck; Hartmut Engels; Gudrun Rappold; Evelin Schröck; Peter Wieacker; Olaf Riess; Thomas Meitinger; André Reis; Tim M Strom
Journal:  Lancet       Date:  2012-09-27       Impact factor: 79.321

Review 5.  Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Authors:  David T Miller; Margaret P Adam; Swaroop Aradhya; Leslie G Biesecker; Arthur R Brothman; Nigel P Carter; Deanna M Church; John A Crolla; Evan E Eichler; Charles J Epstein; W Andrew Faucett; Lars Feuk; Jan M Friedman; Ada Hamosh; Laird Jackson; Erin B Kaminsky; Klaas Kok; Ian D Krantz; Robert M Kuhn; Charles Lee; James M Ostell; Carla Rosenberg; Stephen W Scherer; Nancy B Spinner; Dimitri J Stavropoulos; James H Tepperberg; Erik C Thorland; Joris R Vermeesch; Darrel J Waggoner; Michael S Watson; Christa Lese Martin; David H Ledbetter
Journal:  Am J Hum Genet       Date:  2010-05-14       Impact factor: 11.025

6.  Array analysis and karyotyping: workflow consequences based on a retrospective study of 36,325 patients with idiopathic developmental delay in the Netherlands.

Authors:  Ron Hochstenbach; Ellen van Binsbergen; John Engelen; Aggie Nieuwint; Abeltje Polstra; Pino Poddighe; Claudia Ruivenkamp; Birgit Sikkema-Raddatz; Dominique Smeets; Martin Poot
Journal:  Eur J Med Genet       Date:  2009-04-09       Impact factor: 2.708

7.  Disruptive de novo mutations of DYRK1A lead to a syndromic form of autism and ID.

Authors:  B W M van Bon; B P Coe; R Bernier; C Green; J Gerdts; K Witherspoon; T Kleefstra; M H Willemsen; R Kumar; P Bosco; M Fichera; D Li; D Amaral; F Cristofoli; H Peeters; E Haan; C Romano; H C Mefford; I Scheffer; J Gecz; B B A de Vries; E E Eichler
Journal:  Mol Psychiatry       Date:  2015-02-24       Impact factor: 15.992

8.  Clinical application of whole-exome sequencing across clinical indications.

Authors:  Kyle Retterer; Jane Juusola; Megan T Cho; Patrik Vitazka; Francisca Millan; Federica Gibellini; Annette Vertino-Bell; Nizar Smaoui; Julie Neidich; Kristin G Monaghan; Dianalee McKnight; Renkui Bai; Sharon Suchy; Bethany Friedman; Jackie Tahiliani; Daniel Pineda-Alvarez; Gabriele Richard; Tracy Brandt; Eden Haverfield; Wendy K Chung; Sherri Bale
Journal:  Genet Med       Date:  2015-12-03       Impact factor: 8.822

9.  Whole exome sequencing reveals de novo pathogenic variants in KAT6A as a cause of a neurodevelopmental disorder.

Authors:  Francisca Millan; Megan T Cho; Kyle Retterer; Kristin G Monaghan; Renkui Bai; Patrik Vitazka; David B Everman; Brooke Smith; Brad Angle; Victoria Roberts; LaDonna Immken; Honey Nagakura; Marc DiFazio; Elliott Sherr; Eden Haverfield; Bethany Friedman; Aida Telegrafi; Jane Juusola; Wendy K Chung; Sherri Bale
Journal:  Am J Med Genet A       Date:  2016-05-02       Impact factor: 2.578

10.  Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations.

Authors:  Brian J O'Roak; Pelagia Deriziotis; Choli Lee; Laura Vives; Jerrod J Schwartz; Santhosh Girirajan; Emre Karakoc; Alexandra P Mackenzie; Sarah B Ng; Carl Baker; Mark J Rieder; Deborah A Nickerson; Raphael Bernier; Simon E Fisher; Jay Shendure; Evan E Eichler
Journal:  Nat Genet       Date:  2011-05-15       Impact factor: 38.330

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  16 in total

1.  A Novel De Novo Frameshift Mutation in KAT6A Identified by Whole Exome Sequencing.

Authors:  Asem Alkhateeb; Wafa Alazaizeh
Journal:  J Pediatr Genet       Date:  2018-12-26

2.  A KAT6A variant in a family with autosomal dominantly inherited microcephaly and developmental delay.

Authors:  Joanne Trinh; Irina Hüning; Zafer Yüksel; Nadja Baalmann; Sophie Imhoff; Christine Klein; Arndt Rolfs; Gabriele Gillessen-Kaesbach; Katja Lohmann
Journal:  J Hum Genet       Date:  2018-06-13       Impact factor: 3.172

3.  Paroxysmal Movement Disorder and Epilepsy Caused by a De Novo Truncating Mutation in KAT6A.

Authors:  Stephanie Efthymiou; Vincenzo Salpietro; Conceicao Bettencourt; Henry Houlden
Journal:  J Pediatr Genet       Date:  2018-06-14

4.  Missense Variants in the Histone Acetyltransferase Complex Component Gene TRRAP Cause Autism and Syndromic Intellectual Disability.

Authors:  Benjamin Cogné; Sophie Ehresmann; Eliane Beauregard-Lacroix; Justine Rousseau; Thomas Besnard; Thomas Garcia; Slavé Petrovski; Shiri Avni; Kirsty McWalter; Patrick R Blackburn; Stephan J Sanders; Kévin Uguen; Jacqueline Harris; Julie S Cohen; Moira Blyth; Anna Lehman; Jonathan Berg; Mindy H Li; Usha Kini; Shelagh Joss; Charlotte von der Lippe; Christopher T Gordon; Jennifer B Humberson; Laurie Robak; Daryl A Scott; Vernon R Sutton; Cara M Skraban; Jennifer J Johnston; Annapurna Poduri; Magnus Nordenskjöld; Vandana Shashi; Erica H Gerkes; Ernie M H F Bongers; Christian Gilissen; Yuri A Zarate; Malin Kvarnung; Kevin P Lally; Peggy A Kulch; Brina Daniels; Andres Hernandez-Garcia; Nicholas Stong; Julie McGaughran; Kyle Retterer; Kristian Tveten; Jennifer Sullivan; Madeleine R Geisheker; Asbjorg Stray-Pedersen; Jennifer M Tarpinian; Eric W Klee; Julie C Sapp; Jacob Zyskind; Øystein L Holla; Emma Bedoukian; Francesca Filippini; Anne Guimier; Arnaud Picard; Øyvind L Busk; Jaya Punetha; Rolph Pfundt; Anna Lindstrand; Ann Nordgren; Fayth Kalb; Megha Desai; Ashley Harmon Ebanks; Shalini N Jhangiani; Tammie Dewan; Zeynep H Coban Akdemir; Aida Telegrafi; Elaine H Zackai; Amber Begtrup; Xiaofei Song; Annick Toutain; Ingrid M Wentzensen; Sylvie Odent; Dominique Bonneau; Xénia Latypova; Wallid Deb; Sylvia Redon; Frédéric Bilan; Marine Legendre; Caitlin Troyer; Kerri Whitlock; Oana Caluseriu; Marine I Murphree; Pavel N Pichurin; Katherine Agre; Ralitza Gavrilova; Tuula Rinne; Meredith Park; Catherine Shain; Erin L Heinzen; Rui Xiao; Jeanne Amiel; Stanislas Lyonnet; Bertrand Isidor; Leslie G Biesecker; Dan Lowenstein; Jennifer E Posey; Anne-Sophie Denommé-Pichon; Claude Férec; Xiang-Jiao Yang; Jill A Rosenfeld; Brigitte Gilbert-Dussardier; Séverine Audebert-Bellanger; Richard Redon; Holly A F Stessman; Christoffer Nellaker; Yaping Yang; James R Lupski; David B Goldstein; Evan E Eichler; Francois Bolduc; Stéphane Bézieau; Sébastien Küry; Philippe M Campeau
Journal:  Am J Hum Genet       Date:  2019-02-28       Impact factor: 11.025

5.  A Novel Frameshift Mutation in KAT6A Is Associated with Pancraniosynostosis.

Authors:  Fady P Marji; Jennifer A Hall; Erin Anstadt; Suneeta Madan-Khetarpal; Jesse A Goldstein; Joseph E Losee
Journal:  J Pediatr Genet       Date:  2020-04-25

6.  Bi-allelic KARS1 pathogenic variants affecting functions of cytosolic and mitochondrial isoforms are associated with a progressive and multisystem disease.

Authors:  Gerarda Cappuccio; Camilla Ceccatelli Berti; Enrico Baruffini; Jennifer Sullivan; Vandana Shashi; Tamison Jewett; Tara Stamper; Silvia Maitz; Francesco Canonico; Anya Revah-Politi; Gabriel S Kupchik; Kwame Anyane-Yeboa; Vimla Aggarwal; Andreas Benneche; Eirik Bratland; Siren Berland; Felice D'Arco; Cesar A Alves; Adeline Vanderver; Daniela Longo; Enrico Bertini; Annalaura Torella; Vincenzo Nigro; Alessandra D'Amico; Marjo S van der Knaap; Paola Goffrini; Nicola Brunetti-Pierri
Journal:  Hum Mutat       Date:  2021-05-11       Impact factor: 4.700

7.  Biallelic variants in LARS2 and KARS cause deafness and (ovario)leukodystrophy.

Authors:  Marjo S van der Knaap; Marianna Bugiani; Marisa I Mendes; Lisa G Riley; Desiree E C Smith; Joëlle Rudinger-Thirion; Magali Frugier; Marjolein Breur; Joanna Crawford; Judith van Gaalen; Meyke Schouten; Marjolaine Willems; Quinten Waisfisz; Frederic Tran Mau-Them; Richard J Rodenburg; Ryan J Taft; Boris Keren; John Christodoulou; Christel Depienne; Cas Simons; Gajja S Salomons; Fanny Mochel
Journal:  Neurology       Date:  2019-02-08       Impact factor: 11.800

Review 8.  Clinical Application of Genome and Exome Sequencing as a Diagnostic Tool for Pediatric Patients: a Scoping Review of the Literature.

Authors:  Hadley Stevens Smith; J Michael Swint; Seema R Lalani; Jose-Miguel Yamal; Marcia C de Oliveira Otto; Stephan Castellanos; Amy Taylor; Brendan H Lee; Heidi V Russell
Journal:  Genet Med       Date:  2018-05-14       Impact factor: 8.822

9.  KAT6A Syndrome: genotype-phenotype correlation in 76 patients with pathogenic KAT6A variants.

Authors:  Joanna Kennedy; David Goudie; Edward Blair; Kate Chandler; Shelagh Joss; Victoria McKay; Andrew Green; Ruth Armstrong; Melissa Lees; Benjamin Kamien; Bruce Hopper; Tiong Yang Tan; Patrick Yap; Zornitza Stark; Nobuhiko Okamoto; Noriko Miyake; Naomichi Matsumoto; Ellen Macnamara; Jennifer L Murphy; Elizabeth McCormick; Hakon Hakonarson; Marni J Falk; Dong Li; Patrick Blackburn; Eric Klee; Dusica Babovic-Vuksanovic; Susan Schelley; Louanne Hudgins; Sarina Kant; Bertrand Isidor; Benjamin Cogne; Kimberley Bradbury; Mark Williams; Chirag Patel; Helen Heussler; Celia Duff-Farrier; Phillis Lakeman; Ingrid Scurr; Usha Kini; Mariet Elting; Margot Reijnders; Janneke Schuurs-Hoeijmakers; Mohamed Wafik; Anne Blomhoff; Claudia A L Ruivenkamp; Esther Nibbeling; Alexander J M Dingemans; Emilie D Douine; Stanley F Nelson; Maja Hempel; Tatjana Bierhals; Davor Lessel; Jessika Johannsen; Valerie A Arboleda; Ruth Newbury-Ecob
Journal:  Genet Med       Date:  2018-09-24       Impact factor: 8.822

10.  A de novo heterozygous variant in KAT6A is associated with a newly named neurodevelopmental disorder Arboleda-Tham syndrome-a case report.

Authors:  Mingyan Jiang; Lianlian Yang; Jinhui Wu; Fei Xiong; Jinrong Li
Journal:  Transl Pediatr       Date:  2021-06
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