Literature DB >> 28496054

Days weaving the lagging strand synthesis of DNA - A personal recollection of the discovery of Okazaki fragments and studies on discontinuous replication mechanism.

Tsuneko Okazaki1.   

Abstract

At DNA replication forks, the overall growth of the antiparallel two daughter DNA chains appears to occur 5'-to-3' direction in the leading-strand and 3'-to-5' direction in the lagging-strand using enzyme system only able to elongate 5'-to-3' direction, and I describe in this review how we have analyzed and proved the lagging strand multistep synthesis reactions, called Discontinuous Replication Mechanism, which involve short RNA primer synthesis, primer-dependent short DNA chains (Okazaki fragments) synthesis, primer removal from the Okazaki fragments and gap filling between Okazaki fragments by RNase H and DNA polymerase I, and long lagging strand formation by joining between Okazaki fragments with DNA ligase.

Entities:  

Keywords:  DNA ligase; Okazaki fragments; function of RNase H and DNA polymerase 1; lagging strand synthesis; primer RNA dependent synthesis of Okazaki fragments; processing of Okazaki fragments before ligation

Mesh:

Substances:

Year:  2017        PMID: 28496054      PMCID: PMC5489436          DOI: 10.2183/pjab.93.020

Source DB:  PubMed          Journal:  Proc Jpn Acad Ser B Phys Biol Sci        ISSN: 0386-2208            Impact factor:   3.493


  40 in total

1.  The bacterial chromosome and its manner of replication as seen by autoradiography.

Authors:  J CAIRNS
Journal:  J Mol Biol       Date:  1963-03       Impact factor: 5.469

2.  ENZYMATIC SYNTHESIS OF DEOXYRIBONUCLEIC ACID. XV. PURIFICATION AND PROPERTIES OF A POLYMERASE FROM BACILLUS SUBTILIS.

Authors:  T OKAZAKI; A KORNBERG
Journal:  J Biol Chem       Date:  1964-01       Impact factor: 5.157

3.  Isolation of thymidine diphosphate rhamnose and a novel thymidine diphosphate sugar compound from Escherichia coli strain B.

Authors:  R OKAZAKI; T OKAZAKI; Y KURIKI
Journal:  Biochim Biophys Acta       Date:  1960-02-26

4.  Enzymatic synthesis of deoxyribonucleic acid. I. Preparation of substrates and partial purification of an enzyme from Escherichia coli.

Authors:  I R LEHMAN; M J BESSMAN; E S SIMMS; A KORNBERG
Journal:  J Biol Chem       Date:  1958-07       Impact factor: 5.157

5.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

6.  Assay of RNA-linked nascent DNA pieces with polynucleotide kinase.

Authors:  R Okazaki; S Hirose; T Okazaki; T Ogawa; Y Kurosawa
Journal:  Biochem Biophys Res Commun       Date:  1975-02-17       Impact factor: 3.575

Review 7.  Bacteriophage T7: minimal requirements for the replication of a duplex DNA molecule.

Authors:  C C Richardson
Journal:  Cell       Date:  1983-06       Impact factor: 41.582

8.  Persistence of RNA attached to nascent short DNA pieces in Bacillus subtilis cells defective in DNA polymerase I.

Authors:  F Tamanoi; T Okazaki; R Okazaki
Journal:  Biochem Biophys Res Commun       Date:  1977-07-11       Impact factor: 3.575

9.  RNA-linked nascent DNA pieces in T7 phage-infected Escherichia coli cells. I. Role of gene 6 exonuclease in removal of the linked RNA.

Authors:  K Shinozaki; T Okazaki
Journal:  Mol Gen Genet       Date:  1977-09-09

10.  Mechanism of DNA chain growth. IV. Direction of synthesis of T4 short DNA chains as revealed by exonucleolytic degradation.

Authors:  T Okazaki; R Okazaki
Journal:  Proc Natl Acad Sci U S A       Date:  1969-12       Impact factor: 11.205

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  4 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-07       Impact factor: 11.205

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Authors:  Zuanning Yuan; Huilin Li
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

3.  Dinoroseobacter shibae Outer Membrane Vesicles Are Enriched for the Chromosome Dimer Resolution Site dif.

Authors:  Hui Wang; Nicole Beier; Christian Boedeker; Helena Sztajer; Petra Henke; Meina Neumann-Schaal; Johannes Mansky; Manfred Rohde; Jörg Overmann; Jörn Petersen; Frank Klawonn; Martin Kucklick; Susanne Engelmann; Jürgen Tomasch; Irene Wagner-Döbler
Journal:  mSystems       Date:  2021-01-12       Impact factor: 6.496

4.  DGR mutagenic transposition occurs via hypermutagenic reverse transcription primed by nicked template RNA.

Authors:  Santa S Naorem; Jin Han; Shufang Wang; William R Lee; Xiao Heng; Jeff F Miller; Huatao Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-06       Impact factor: 11.205

  4 in total

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