Literature DB >> 28492324

Selective 1H-1H Distance Restraints in Fully Protonated Proteins by Very Fast Magic-Angle Spinning Solid-State NMR.

Mukul G Jain1, Daniela Lalli2, Jan Stanek2, Chandrakala Gowda1, Satya Prakash1, Tom S Schwarzer3, Tobias Schubeis2, Kathrin Castiglione3, Loren B Andreas4, P K Madhu1,5, Guido Pintacuda2, Vipin Agarwal1.   

Abstract

Very fast magic-angle spinning (MAS > 80 kHz) NMR combined with high-field magnets has enabled the acquisition of proton-detected spectra in fully protonated solid samples with sufficient resolution and sensitivity. One of the primary challenges in structure determination of protein is observing long-range 1H-1H contacts. Here we use band-selective spin-lock pulses to obtain selective 1H-1H contacts (e.g., HN-HN) on the order of 5-6 Å in fully protonated proteins at 111 kHz MAS. This approach is a major advancement in structural characterization of proteins given that magnetization can be selectively transferred between protons that are 5-6 Å apart despite the presence of other protons at shorter distance. The observed contacts are similar to those previously observed only in perdeuterated proteins with selective protonation. Simulations and experiments show the proposed method has performance that is superior to that of the currently used methods. The method is demonstrated on GB1 and a β-barrel membrane protein, AlkL.

Entities:  

Year:  2017        PMID: 28492324     DOI: 10.1021/acs.jpclett.7b00983

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  9 in total

1.  Guide to Simulating Complex NMR Probe Circuits.

Authors:  F David Doty
Journal:  Concepts Magn Reson Part A Bridg Educ Res       Date:  2018-03       Impact factor: 0.481

2.  Electrostatic Constraints Assessed by 1H MAS NMR Illuminate Differences in Crystalline Polymorphs.

Authors:  Joshua T Damron; Kortney M Kersten; Manoj Kumar Pandey; Kamal H Mroue; Jayasubba Reddy Yarava; Yusuke Nishiyama; Adam J Matzger; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem Lett       Date:  2017-08-25       Impact factor: 6.475

3.  Exact distance measurements for structure and dynamics in solid proteins by fast-magic-angle-spinning NMR.

Authors:  Kristof Grohe; Evgeny Nimerovsky; Himanshu Singh; Suresh K Vasa; Benedikt Söldner; Beat Vögeli; Chad M Rienstra; Rasmus Linser
Journal:  Chem Commun (Camb)       Date:  2019-06-14       Impact factor: 6.222

4.  High-Sensitivity Detection of Nanometer 1H-19F Distances for Protein Structure Determination by 1H-Detected Fast MAS NMR.

Authors:  Alexander A Shcherbakov; Venkata Shiva Mandala; Mei Hong
Journal:  J Phys Chem B       Date:  2019-05-08       Impact factor: 2.991

Review 5.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

Review 6.  From Angstroms to Nanometers: Measuring Interatomic Distances by Solid-State NMR.

Authors:  Alexander A Shcherbakov; João Medeiros-Silva; Nhi Tran; Martin D Gelenter; Mei Hong
Journal:  Chem Rev       Date:  2021-10-25       Impact factor: 72.087

7.  Protein-Protein Interfaces Probed by Methyl Labeling and Proton-Detected Solid-State NMR Spectroscopy.

Authors:  Maximilian Zinke; Pascal Fricke; Sascha Lange; Sophie Zinn-Justin; Adam Lange
Journal:  Chemphyschem       Date:  2018-06-27       Impact factor: 3.102

8.  Modest Offset Difference Internuclear Selective Transfer via Homonuclear Dipolar Coupling.

Authors:  Evgeny Nimerovsky; Eszter E Najbauer; Kumar Tekwani Movellan; Kai Xue; Stefan Becker; Loren B Andreas
Journal:  J Phys Chem Lett       Date:  2022-02-08       Impact factor: 6.475

9.  Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional 1H-detected solid-state NMR.

Authors:  Alexander Klein; Petra Rovó; Varun V Sakhrani; Yangyang Wang; Jacob B Holmes; Viktoriia Liu; Patricia Skowronek; Laura Kukuk; Suresh K Vasa; Peter Güntert; Leonard J Mueller; Rasmus Linser
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-25       Impact factor: 11.205

  9 in total

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