Literature DB >> 28488798

A comparison of sedimentary DNA and pollen from lake sediments in recording vegetation composition at the Siberian treeline.

Bastian Niemeyer1,2, Laura S Epp1, Kathleen R Stoof-Leichsenring1, Luidmila A Pestryakova3, Ulrike Herzschuh1,2,4.   

Abstract

Reliable information on past and present vegetation is important to project future changes, especially for rapidly transitioning areas such as the boreal treeline. To study past vegetation, pollen analysis is common, while current vegetation is usually assessed by field surveys. Application of detailed sedimentary DNA (sedDNA) records has the potential to enhance our understanding of vegetation changes, but studies systematically investigating the power of this proxy are rare to date. This study compares sedDNA metabarcoding and pollen records from surface sediments of 31 lakes along a north-south gradient of increasing forest cover in northern Siberia (Taymyr peninsula) with data from field surveys in the surroundings of the lakes. sedDNA metabarcoding recorded 114 plant taxa, about half of them to species level, while pollen analyses identified 43 taxa, both exceeding the 31 taxa found by vegetation field surveys. Increasing Larix percentages from north to south were consistently recorded by all three methods and principal component analyses based on percentage data of vegetation surveys and DNA sequences separated tundra from forested sites. Comparisons of the ordinations using procrustes and protest analyses show a significant fit among all compared pairs of records. Despite similarities of sedDNA and pollen records, certain idiosyncrasies, such as high percentages of Alnus and Betula in all pollen and high percentages of Salix in all sedDNA spectra, are observable. Our results from the tundra to single-tree tundra transition zone show that sedDNA analyses perform better than pollen in recording site-specific richness (i.e., presence/absence of taxa in the vicinity of the lake) and perform as well as pollen in tracing vegetation composition.
© 2017 John Wiley & Sons Ltd.

Keywords:  Siberia; environmental DNA; metabarcoding; pollen; trnL marker; vegetation

Mesh:

Substances:

Year:  2017        PMID: 28488798     DOI: 10.1111/1755-0998.12689

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  9 in total

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Authors:  Sarah E Crump; Bianca Fréchette; Matthew Power; Sam Cutler; Gregory de Wet; Martha K Raynolds; Jonathan H Raberg; Jason P Briner; Elizabeth K Thomas; Julio Sepúlveda; Beth Shapiro; Michael Bunce; Gifford H Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-30       Impact factor: 11.205

2.  Sedimentary ancient DNA reveals a threat of warming-induced alpine habitat loss to Tibetan Plateau plant diversity.

Authors:  Sisi Liu; Stefan Kruse; Dirk Scherler; Richard H Ree; Heike H Zimmermann; Kathleen R Stoof-Leichsenring; Laura S Epp; Steffen Mischke; Ulrike Herzschuh
Journal:  Nat Commun       Date:  2021-05-20       Impact factor: 14.919

3.  Plant DNA metabarcoding of lake sediments: How does it represent the contemporary vegetation.

Authors:  Inger Greve Alsos; Youri Lammers; Nigel Giles Yoccoz; Tina Jørgensen; Per Sjögren; Ludovic Gielly; Mary E Edwards
Journal:  PLoS One       Date:  2018-04-17       Impact factor: 3.240

4.  Temporal and spatial patterns of mitochondrial haplotype and species distributions in Siberian larches inferred from ancient environmental DNA and modeling.

Authors:  Laura S Epp; Stefan Kruse; Nadja J Kath; Kathleen R Stoof-Leichsenring; Ralph Tiedemann; Luidmila A Pestryakova; Ulrike Herzschuh
Journal:  Sci Rep       Date:  2018-11-29       Impact factor: 4.379

5.  New insights on lake sediment DNA from the catchment: importance of taphonomic and analytical issues on the record quality.

Authors:  C Giguet-Covex; G F Ficetola; K Walsh; J Poulenard; M Bajard; L Fouinat; P Sabatier; L Gielly; E Messager; A L Develle; F David; P Taberlet; E Brisset; F Guiter; R Sinet; F Arnaud
Journal:  Sci Rep       Date:  2019-10-11       Impact factor: 4.379

6.  Holocene chloroplast genetic variation of shrubs (Alnus alnobetula, Betula nana, Salix sp.) at the siberian tundra-taiga ecotone inferred from modern chloroplast genome assembly and sedimentary ancient DNA analyses.

Authors:  Stefano Meucci; Luise Schulte; Heike H Zimmermann; Kathleen R Stoof-Leichsenring; Laura Epp; Pernille Bronken Eidesen; Ulrike Herzschuh
Journal:  Ecol Evol       Date:  2021-01-31       Impact factor: 2.912

7.  Plant diversity in sedimentary DNA obtained from high-latitude (Siberia) and high-elevation lakes (China).

Authors:  Kathleen Rosmarie Stoof-Leichsenring; Sisi Liu; Weihan Jia; Kai Li; Luidmila A Pestryakova; Steffen Mischke; Xianyong Cao; Xingqi Liu; Jian Ni; Stefan Neuhaus; Ulrike Herzschuh
Journal:  Biodivers Data J       Date:  2020-12-14

8.  Collapse of the mammoth-steppe in central Yukon as revealed by ancient environmental DNA.

Authors:  Tyler J Murchie; Alistair J Monteath; Matthew E Mahony; George S Long; Scott Cocker; Tara Sadoway; Emil Karpinski; Grant Zazula; Ross D E MacPhee; Duane Froese; Hendrik N Poinar
Journal:  Nat Commun       Date:  2021-12-08       Impact factor: 14.919

9.  The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data.

Authors:  Heike H Zimmermann; Elena Raschke; Laura S Epp; Kathleen R Stoof-Leichsenring; Lutz Schirrmeister; Georg Schwamborn; Ulrike Herzschuh
Journal:  Genes (Basel)       Date:  2017-10-13       Impact factor: 4.096

  9 in total

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