Literature DB >> 28487400

Native and engineered sensors for Ca2+ and Zn2+: lessons from calmodulin and MTF1.

Margaret C Carpenter1, Amy E Palmer2.   

Abstract

Ca2+ and Zn2+ dynamics have been identified as important drivers of physiological processes. In order for these dynamics to encode function, the cell must have sensors that transduce changes in metal concentration to specific downstream actions. Here we compare and contrast the native metal sensors: calmodulin (CaM), the quintessential Ca2+ sensor and metal-responsive transcription factor 1 (MTF1), a candidate Zn2+ sensor. While CaM recognizes and modulates the activity of hundreds of proteins through allosteric interactions, MTF1 recognizes a single DNA motif that is distributed throughout the genome regulating the transcription of many target genes. We examine how the different inorganic chemistries of these two metal ions may shape these different mechanisms transducing metal ion concentration into changing physiologic activity. In addition to native metal sensors, scientists have engineered sensors to spy on the dynamic changes of metals in cells. The inorganic chemistry of the metals shapes the possibilities in the design strategies of engineered sensors. We examine how different strategies to tune the affinities of engineered sensors mirror the strategies nature developed to sense both Ca2+ and Zn2+ in cells.
© 2017 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  calcium signalling; sensors; zinc finger

Mesh:

Substances:

Year:  2017        PMID: 28487400      PMCID: PMC6016828          DOI: 10.1042/EBC20160069

Source DB:  PubMed          Journal:  Essays Biochem        ISSN: 0071-1365            Impact factor:   8.000


  48 in total

1.  Structure of the gating domain of a Ca2+-activated K+ channel complexed with Ca2+/calmodulin.

Authors:  M A Schumacher; A F Rivard; H P Bächinger; J P Adelman
Journal:  Nature       Date:  2001-04-26       Impact factor: 49.962

2.  The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair.

Authors:  Karl-Peter Hopfner; Lisa Craig; Gabriel Moncalian; Robert A Zinkel; Takehiko Usui; Barbara A L Owen; Annette Karcher; Brendan Henderson; Jean-Luc Bodmer; Cynthia T McMurray; James P Carney; John H J Petrini; John A Tainer
Journal:  Nature       Date:  2002-08-01       Impact factor: 49.962

3.  Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry.

Authors:  Christopher L Dupont; Song Yang; Brian Palenik; Philip E Bourne
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-10       Impact factor: 11.205

4.  Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs.

Authors:  Amy E Palmer; Marta Giacomello; Tanja Kortemme; S Andrew Hires; Varda Lev-Ram; David Baker; Roger Y Tsien
Journal:  Chem Biol       Date:  2006-05

Review 5.  Lessons from zinc-binding peptides.

Authors:  J M Berg; H A Godwin
Journal:  Annu Rev Biophys Biomol Struct       Date:  1997

6.  A conserved cysteine cluster, essential for transcriptional activity, mediates homodimerization of human metal-responsive transcription factor-1 (MTF-1).

Authors:  Viola Günther; Alisa M Davis; Oleg Georgiev; Walter Schaffner
Journal:  Biochim Biophys Acta       Date:  2011-10-25

7.  "Zn-link": a metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase E.

Authors:  Anastasia J Callaghan; Yulia Redko; Loretta M Murphy; J Günter Grossmann; David Yates; Elspeth Garman; Leopold L Ilag; Carol V Robinson; Martyn F Symmons; Kenneth J McDowall; Ben F Luisi
Journal:  Biochemistry       Date:  2005-03-29       Impact factor: 3.162

Review 8.  Calmodulin in action: diversity in target recognition and activation mechanisms.

Authors:  Klaus P Hoeflich; Mitsuhiko Ikura
Journal:  Cell       Date:  2002-03-22       Impact factor: 41.582

9.  Metal ion affinities of the zinc finger domains of the metal responsive element-binding transcription factor-1 (MTF1).

Authors:  Anthony L Guerrerio; Jeremy M Berg
Journal:  Biochemistry       Date:  2004-05-11       Impact factor: 3.162

10.  New sensors for quantitative measurement of mitochondrial Zn(2+).

Authors:  J Genevieve Park; Yan Qin; Domenico F Galati; Amy E Palmer
Journal:  ACS Chem Biol       Date:  2012-08-10       Impact factor: 5.100

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Journal:  Curr Opin Chem Biol       Date:  2020-05-11       Impact factor: 8.822

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Authors:  Jason A Justice; Daniel T Manjooran; Chung-Yang Yeh; Karen A Hartnett-Scott; Anthony J Schulien; Gabrielle J Kosobucki; Shalom Mammen; Michael J Palladino; Elias Aizenman
Journal:  J Pharmacol Exp Ther       Date:  2018-09-06       Impact factor: 4.030

Review 3.  Increased Thyroid Cancer Incidence in Volcanic Areas: A Role of Increased Heavy Metals in the Environment?

Authors:  Pasqualino Malandrino; Marco Russo; Fiorenza Gianì; Gabriella Pellegriti; Paolo Vigneri; Antonino Belfiore; Enrico Rizzarelli; Riccardo Vigneri
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