Literature DB >> 28485093

A theoretical-experimental methodology for assessing the sensitivity of biomedical spectral imaging platforms, assays, and analysis methods.

Silas J Leavesley1,2,3, Brenner Sweat1,4, Caitlyn Abbott1, Peter Favreau1,5,6, Thomas C Rich2,3,7.   

Abstract

Spectral imaging technologies have been used for many years by the remote sensing community. More recently, these approaches have been applied to biomedical problems, where they have shown great promise. However, biomedical spectral imaging has been complicated by the high variance of biological data and the reduced ability to construct test scenarios with fixed ground truths. Hence, it has been difficult to objectively assess and compare biomedical spectral imaging assays and technologies. Here, we present a standardized methodology that allows assessment of the performance of biomedical spectral imaging equipment, assays, and analysis algorithms. This methodology incorporates real experimental data and a theoretical sensitivity analysis, preserving the variability present in biomedical image data. We demonstrate that this approach can be applied in several ways: to compare the effectiveness of spectral analysis algorithms, to compare the response of different imaging platforms, and to assess the level of target signature required to achieve a desired performance. Results indicate that it is possible to compare even very different hardware platforms using this methodology. Future applications could include a range of optimization tasks, such as maximizing detection sensitivity or acquisition speed, providing high utility for investigators ranging from design engineers to biomedical scientists.
© 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  constrained energy minimization; linear unmixing; matched filter; microscopy; spectral; spectral angle mapper; spectroscopy

Mesh:

Year:  2017        PMID: 28485093      PMCID: PMC5680159          DOI: 10.1002/jbio.201600227

Source DB:  PubMed          Journal:  J Biophotonics        ISSN: 1864-063X            Impact factor:   3.207


  43 in total

1.  Hyperspectral imaging: a novel approach for microscopic analysis.

Authors:  R A Schultz; T Nielsen; J R Zavaleta; R Ruch; R Wyatt; H R Garner
Journal:  Cytometry       Date:  2001-04-01

Review 2.  Multi-spectral imaging and linear unmixing add a whole new dimension to laser scanning fluorescence microscopy.

Authors:  M E Dickinson; G Bearman; S Tille; R Lansford; S E Fraser
Journal:  Biotechniques       Date:  2001-12       Impact factor: 1.993

Review 3.  Seeing the wood through the trees: a review of techniques for distinguishing green fluorescent protein from endogenous autofluorescence.

Authors:  N Billinton; A W Knight
Journal:  Anal Biochem       Date:  2001-04-15       Impact factor: 3.365

Review 4.  Which threshold to detect hypoglycemia? Value of receiver-operator curve analysis to find a compromise between sensitivity and specificity.

Authors:  G Reach
Journal:  Diabetes Care       Date:  2001-05       Impact factor: 19.112

Review 5.  Multispectral imaging fluorescence microscopy for living cells.

Authors:  Yasushi Hiraoka; Takeshi Shimi; Tokuko Haraguchi
Journal:  Cell Struct Funct       Date:  2002-10       Impact factor: 2.212

6.  Application of spectral imaging microscopy in cytomics and fluorescence resonance energy transfer (FRET) analysis.

Authors:  Rupert C Ecker; Rainer de Martin; Georg E Steiner; Johannes A Schmid
Journal:  Cytometry A       Date:  2004-06       Impact factor: 4.355

Review 7.  Fluorescence lifetime measurements and biological imaging.

Authors:  Mikhail Y Berezin; Samuel Achilefu
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

8.  Quantitative linear unmixing of CFP and YFP from spectral images acquired with two-photon excitation.

Authors:  Christopher Thaler; Steven S Vogel
Journal:  Cytometry A       Date:  2006-08-01       Impact factor: 4.355

9.  Excitation-scanning hyperspectral imaging microscope.

Authors:  Peter F Favreau; Clarissa Hernandez; Tiffany Heaster; Diego F Alvarez; Thomas C Rich; Prashant Prabhat; Silas J Leavesley
Journal:  J Biomed Opt       Date:  2014-04       Impact factor: 3.170

10.  Hyperspectral imaging fluorescence excitation scanning for colon cancer detection.

Authors:  Silas J Leavesley; Mikayla Walters; Carmen Lopez; Thomas Baker; Peter F Favreau; Thomas C Rich; Paul F Rider; Carole W Boudreaux
Journal:  J Biomed Opt       Date:  2016-10-01       Impact factor: 3.170

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  5 in total

1.  Optimization of Light Transmission through an Excitation-scan Hyperspectral Mirror Array System.

Authors:  Marina Parker; Craig M Browning; Thomas C Rich; Silas J Leavesley
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03-04

2.  Spectral Illumination System Utilizing Spherical Reflection Optics.

Authors:  Samantha Gunn Mayes; Craig Browning; Samuel A Mayes; Marina Parker; Thomas C Rich; Silas J Leavesley
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-02-17

3.  A Spherical Mirror-based Illumination System for Fluorescence Excitation-Scanning Hyperspectral Imaging.

Authors:  Samantha Gunn Mayes; Samuel A Mayes; Craig Browning; Marina Parker; Thomas C Rich; Silas J Leavesley
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03-04

4.  Microscopy is better in color: development of a streamlined spectral light path for real-time multiplex fluorescence microscopy.

Authors:  Craig M Browning; Samantha Mayes; Samuel A Mayes; Thomas C Rich; Silas J Leavesley
Journal:  Biomed Opt Express       Date:  2022-06-07       Impact factor: 3.562

5.  Hyperspectral imaging fluorescence excitation scanning (HIFEX) microscopy for live cell imaging.

Authors:  Silas J Leavesley; John Robert Griswold; Joshua Deal; Kathleen McAlister; Sam Mayes; Craig Browning; Marina Parker; Samantha Gunn Mayes; Thomas C Rich
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-02-21
  5 in total

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