Literature DB >> 28479235

Biological standards for the Knowledge-Based BioEconomy: What is at stake.

Víctor de Lorenzo1, Markus Schmidt2.   

Abstract

The contribution of life sciences to the Knowledge-Based Bioeconomy (KBBE) asks for the transition of contemporary, gene-based biotechnology from being a trial-and-error endeavour to becoming an authentic branch of engineering. One requisite to this end is the need for standards to measure and represent accurately biological functions, along with languages for data description and exchange. However, the inherent complexity of biological systems and the lack of quantitative tradition in the field have largely curbed this enterprise. Fortunately, the onset of systems and synthetic biology has emphasized the need for standards not only to manage omics data, but also to increase reproducibility and provide the means of engineering living systems in earnest. Some domains of biotechnology can be easily standardized (e.g. physical composition of DNA sequences, tools for genome editing, languages to encode workflows), while others might be standardized with some dedicated research (e.g. biological metrology, operative systems for bio-programming cells) and finally others will require a considerable effort, e.g. defining the rules that allow functional composition of biological activities. Despite difficulties, these are worthy attempts, as the history of technology shows that those who set/adopt standards gain a competitive advantage over those who do not.
Copyright © 2017 Elsevier B.V. All rights reserved.

Keywords:  Bioengineering; Fourth Industrial revolutionFourth industrial revolution; KBBE; Orthogonalization; PoPs; Retroactivity; SBOL; Standards; Synthetic biology; iGEM

Mesh:

Year:  2017        PMID: 28479235     DOI: 10.1016/j.nbt.2017.05.001

Source DB:  PubMed          Journal:  N Biotechnol        ISSN: 1871-6784            Impact factor:   5.079


  12 in total

1.  Focus Issue Editorial: Synthetic Biology.

Authors:  Andrew D Hanson; Julian M Hibberd; Mattheos A G Koffas; Joachim Kopka; Eleanore T Wurtzel
Journal:  Plant Physiol       Date:  2019-03       Impact factor: 8.340

2.  Synthetic microbiology: from analogy to methodology.

Authors:  Víctor de Lorenzo
Journal:  Microb Biotechnol       Date:  2017-07-26       Impact factor: 5.813

Review 3.  Biological Materials: The Next Frontier for Cell-Free Synthetic Biology.

Authors:  Richard J R Kelwick; Alexander J Webb; Paul S Freemont
Journal:  Front Bioeng Biotechnol       Date:  2020-05-12

4.  SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts.

Authors:  Esteban Martínez-García; Angel Goñi-Moreno; Bryan Bartley; James McLaughlin; Lucas Sánchez-Sampedro; Héctor Pascual Del Pozo; Clara Prieto Hernández; Ada Serena Marletta; Davide De Lucrezia; Guzmán Sánchez-Fernández; Sofía Fraile; Víctor de Lorenzo
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

5.  Are synthetic biology standards applicable in everyday research practice?

Authors:  Huseyin Tas; Adam Amara; Miguel E Cueva; Nadine Bongaerts; Alicia Calvo-Villamañán; Samir Hamadache; Konstantinos Vavitsas
Journal:  Microb Biotechnol       Date:  2020-06-21       Impact factor: 5.813

Review 6.  Bacterial cell-free expression technology to in vitro systems engineering and optimization.

Authors:  Filippo Caschera
Journal:  Synth Syst Biotechnol       Date:  2017-08-07

7.  pTRA - A reporter system for monitoring the intracellular dynamics of gene expression.

Authors:  Sabine G Wagner; Martin Ziegler; Hannes Löwe; Andreas Kremling; Katharina Pflüger-Grau
Journal:  PLoS One       Date:  2018-05-17       Impact factor: 3.240

8.  The long journey towards standards for engineering biosystems: Are the Molecular Biology and the Biotech communities ready to standardise?

Authors:  Jacob Beal; Angel Goñi-Moreno; Chris Myers; Ariel Hecht; María Del Carmen de Vicente; Maria Parco; Markus Schmidt; Kenneth Timmis; Geoff Baldwin; Steffi Friedrichs; Paul Freemont; Daisuke Kiga; Elena Ordozgoiti; Maja Rennig; Leonardo Rios; Kristie Tanner; Víctor de Lorenzo; Manuel Porcar
Journal:  EMBO Rep       Date:  2020-04-26       Impact factor: 8.807

Review 9.  Order Through Disorder: The Characteristic Variability of Systems.

Authors:  Yaron Ilan
Journal:  Front Cell Dev Biol       Date:  2020-03-20

Review 10.  Introducing Patterns of Variability for Overcoming Compensatory Adaptation of the Immune System to Immunomodulatory Agents: A Novel Method for Improving Clinical Response to Anti-TNF Therapies.

Authors:  Tawfik Khoury; Yaron Ilan
Journal:  Front Immunol       Date:  2019-11-20       Impact factor: 7.561

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