Literature DB >> 28466051

Comparative study of viromes from freshwater samples of the Ile-Balkhash region of Kazakhstan captured through metagenomic analysis.

Madina Saparbaevna Alexyuk1, Aizhan Sabirzhanovna Turmagambetova1, Pavel Gennadievich Alexyuk1, Andrey Pavlinovich Bogoyavlenskiy1, Vladimir Eleazarovich Berezin1.   

Abstract

Viruses are the most abundant biological entities on Earth and can be found in a variety of environments. A high prevalence of viruses in marine and freshwater systems was initially reported by Spencer in 1955, but the ecological significance of viruses is insufficiently known even until the present day. Viruses are known to play a key role in the biology of freshwater bacteria: controlling the bacterial abundance, composition of species, and acting as intermediaries in the transfer of genes between bacterial populations. In our study a variety of viromes of the Ile-Balkhash water basin were identified. It was found that the composition of viruses of the Ile-Balkhash region is made up not only of a wide variety of autochthonous viruses typical for phytoplankton hydro ecosystems, but also of representatives of allochthonous viruses-such families as Coronaviridae, Reoviridae and Herpesviridae-indicating anthropogenic pollution of the basin. The research designed to investigate the viral abundance, spread, infectious cycle, seasonal dynamics, composition of the viral community, and the influence of viruses on the bacteria, phytoplankton and recycling of nutrients, as well as the impact of environmental factors on the viral ecology in a variety of marine and freshwater systems is very relevant nowadays.

Entities:  

Keywords:  Bacteriophage; Biodiversity; Metagenomics; Viromes; Water ecosystems

Year:  2017        PMID: 28466051      PMCID: PMC5377873          DOI: 10.1007/s13337-016-0353-5

Source DB:  PubMed          Journal:  Virusdisease        ISSN: 2347-3584


  23 in total

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Journal:  ISME J       Date:  2008-02-07       Impact factor: 10.302

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Authors:  Curtis A Suttle
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

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8.  FragGeneScan: predicting genes in short and error-prone reads.

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Journal:  Nucleic Acids Res       Date:  2010-08-30       Impact factor: 16.971

9.  Diverse CRISPRs evolving in human microbiomes.

Authors:  Mina Rho; Yu-Wei Wu; Haixu Tang; Thomas G Doak; Yuzhen Ye
Journal:  PLoS Genet       Date:  2012-06-13       Impact factor: 5.917

10.  The marine viromes of four oceanic regions.

Authors:  Florent E Angly; Ben Felts; Mya Breitbart; Peter Salamon; Robert A Edwards; Craig Carlson; Amy M Chan; Matthew Haynes; Scott Kelley; Hong Liu; Joseph M Mahaffy; Jennifer E Mueller; Jim Nulton; Robert Olson; Rachel Parsons; Steve Rayhawk; Curtis A Suttle; Forest Rohwer
Journal:  PLoS Biol       Date:  2006-11       Impact factor: 8.029

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  8 in total

Review 1.  Intestinal viral infections of nSARS-CoV2 in the Indian community: Risk of virus spread in India.

Authors:  Harjeet S Maan; Deepti Chaurasia; Garima Kapoor; Lokendra Dave; Arshi Siddiqui; Savita Pal; Hari O Singh; Debasis Biswas; Rashmi Chowdhary
Journal:  J Med Virol       Date:  2021-12-03       Impact factor: 20.693

2.  SARS-CoV-2 in environmental perspective: Occurrence, persistence, surveillance, inactivation and challenges.

Authors:  S Venkata Mohan; Manupati Hemalatha; Harishankar Kopperi; I Ranjith; A Kiran Kumar
Journal:  Chem Eng J       Date:  2020-09-04       Impact factor: 13.273

Review 3.  Coronavirus in water environments: Occurrence, persistence and concentration methods - A scoping review.

Authors:  Giuseppina La Rosa; Lucia Bonadonna; Luca Lucentini; Sebastien Kenmoe; Elisabetta Suffredini
Journal:  Water Res       Date:  2020-04-28       Impact factor: 11.236

Review 4.  Impacts of COVID-19 pandemic on the wastewater pathway into surface water: A review.

Authors:  Erick R Bandala; Brittany R Kruger; Ivana Cesarino; Alcides L Leao; Buddhi Wijesiri; Ashantha Goonetilleke
Journal:  Sci Total Environ       Date:  2021-02-05       Impact factor: 7.963

5.  A Methodological Approach to Water Concentration to Investigate the Presence of SARS-CoV-2 RNA in Surface Freshwaters.

Authors:  Marina Tesauro; Mara Terraneo; Michela Consonni; Clara Fappani; Daniela Colzani; Caterina Stevanin; Antonella Amendola; Daniele Masseroni; Elisabetta Tanzi
Journal:  Pathogens       Date:  2022-07-28

6.  Defining the methodological approach for wastewater-based epidemiological studies-Surveillance of SARS-CoV-2.

Authors:  Harishankar Kopperi; Athmakuri Tharak; Manupati Hemalatha; Uday Kiran; C G Gokulan; Rakesh K Mishra; S Venkata Mohan
Journal:  Environ Technol Innov       Date:  2021-06-17

7.  The novel SARS-CoV-2 pandemic: Possible environmental transmission, detection, persistence and fate during wastewater and water treatment.

Authors:  Sanjeeb Mohapatra; N Gayathri Menon; Gayatree Mohapatra; Lakshmi Pisharody; Aryamav Pattnaik; N Gowri Menon; Prudhvi Lal Bhukya; Manjita Srivastava; Meenakshi Singh; Muneesh Kumar Barman; Karina Yew-Hoong Gin; Suparna Mukherji
Journal:  Sci Total Environ       Date:  2020-10-06       Impact factor: 7.963

8.  Longitudinal and Long-Term Wastewater Surveillance for COVID-19: Infection Dynamics and Zoning of Urban Community.

Authors:  Athmakuri Tharak; Harishankar Kopperi; Manupati Hemalatha; Uday Kiran; Gokulan C G; Shivranjani Moharir; Rakesh K Mishra; S Venkata Mohan
Journal:  Int J Environ Res Public Health       Date:  2022-02-25       Impact factor: 3.390

  8 in total

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