Literature DB >> 28465333

Human organomics: a fresh approach to understanding human development using single-cell transcriptomics.

J Gray Camp1, Barbara Treutlein2,3,4.   

Abstract

Innovative methods designed to recapitulate human organogenesis from pluripotent stem cells provide a means to explore human developmental biology. New technologies to sequence and analyze single-cell transcriptomes can deconstruct these 'organoids' into constituent parts, and reconstruct lineage trajectories during cell differentiation. In this Spotlight article we summarize the different approaches to performing single-cell transcriptomics on organoids, and discuss the opportunities and challenges of applying these techniques to generate organ-level, mechanistic models of human development and disease. Together, these technologies will move past characterization to the prediction of human developmental and disease-related phenomena.
© 2017. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Human development; Organogenesis; Organoid; Pluripotent stem cell; Single-cell transcriptomics; Transcriptome

Mesh:

Year:  2017        PMID: 28465333     DOI: 10.1242/dev.150458

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  9 in total

Review 1.  Engineering a second brain in a dish.

Authors:  Maxime M Mahe
Journal:  Brain Res       Date:  2018-08-15       Impact factor: 3.252

Review 2.  Connecting past and present: single-cell lineage tracing.

Authors:  Cheng Chen; Yuanxin Liao; Guangdun Peng
Journal:  Protein Cell       Date:  2022-04-19       Impact factor: 15.328

Review 3.  Advances of single-cell genomics and epigenomics in human disease: where are we now?

Authors:  Rizqah Kamies; Celia P Martinez-Jimenez
Journal:  Mamm Genome       Date:  2020-04-08       Impact factor: 2.957

Review 4.  Biologically inspired approaches to enhance human organoid complexity.

Authors:  Emily M Holloway; Meghan M Capeling; Jason R Spence
Journal:  Development       Date:  2019-04-16       Impact factor: 6.862

5.  Genetic Modification of Brain Organoids.

Authors:  Jan Fischer; Michael Heide; Wieland B Huttner
Journal:  Front Cell Neurosci       Date:  2019-12-17       Impact factor: 5.505

Review 6.  From Brain Organoids to Networking Assembloids: Implications for Neuroendocrinology and Stress Medicine.

Authors:  Evanthia A Makrygianni; George P Chrousos
Journal:  Front Physiol       Date:  2021-06-10       Impact factor: 4.566

Review 7.  Genomics of autism spectrum disorder: approach to therapy.

Authors:  Fatma Ayhan; Genevieve Konopka
Journal:  F1000Res       Date:  2018-05-22

8.  ATOH1/RFX1/RFX3 transcription factors facilitate the differentiation and characterisation of inner ear hair cell-like cells from patient-specific induced pluripotent stem cells harbouring A8344G mutation of mitochondrial DNA.

Authors:  Yen-Chun Chen; Chia-Ling Tsai; Yau-Huei Wei; Yu-Ting Wu; Wei-Ting Hsu; Hung-Ching Lin; Yi-Chao Hsu
Journal:  Cell Death Dis       Date:  2018-04-01       Impact factor: 8.469

Review 9.  Deafness-in-a-dish: modeling hereditary deafness with inner ear organoids.

Authors:  Daniel R Romano; Eri Hashino; Rick F Nelson
Journal:  Hum Genet       Date:  2021-08-03       Impact factor: 5.881

  9 in total

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