Literature DB >> 28464561

Progress toward openness, transparency, and reproducibility in cognitive neuroscience.

Rick O Gilmore1, Michele T Diaz1,2, Brad A Wyble1, Tal Yarkoni3.   

Abstract

Accumulating evidence suggests that many findings in psychological science and cognitive neuroscience may prove difficult to reproduce; statistical power in brain imaging studies is low and has not improved recently; software errors in analysis tools are common and can go undetected for many years; and, a few large-scale studies notwithstanding, open sharing of data, code, and materials remain the rare exception. At the same time, there is a renewed focus on reproducibility, transparency, and openness as essential core values in cognitive neuroscience. The emergence and rapid growth of data archives, meta-analytic tools, software pipelines, and research groups devoted to improved methodology reflect this new sensibility. We review evidence that the field has begun to embrace new open research practices and illustrate how these can begin to address problems of reproducibility, statistical power, and transparency in ways that will ultimately accelerate discovery.
© 2017 New York Academy of Sciences.

Entities:  

Keywords:  data sharing; open science; reproducibility

Mesh:

Year:  2017        PMID: 28464561      PMCID: PMC5545750          DOI: 10.1111/nyas.13325

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  102 in total

1.  The quantitative evaluation of functional neuroimaging experiments: the NPAIRS data analysis framework.

Authors:  Stephen C Strother; Jon Anderson; Lars Kai Hansen; Ulrik Kjems; Rafal Kustra; John Sidtis; Sally Frutiger; Suraj Muley; Stephen LaConte; David Rottenberg
Journal:  Neuroimage       Date:  2002-04       Impact factor: 6.556

2.  The Functional Magnetic Resonance Imaging Data Center (fMRIDC): the challenges and rewards of large-scale databasing of neuroimaging studies.

Authors:  J D Van Horn; J S Grethe; P Kostelec; J B Woodward; J A Aslam; D Rus; D Rockmore; M S Gazzaniga
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2001-08-29       Impact factor: 6.237

Review 3.  Opinion: Databasing fMRI studies towards a 'discovery science' of brain function.

Authors:  John D Van Horn; Michael S Gazzaniga
Journal:  Nat Rev Neurosci       Date:  2002-04       Impact factor: 34.870

4.  EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis.

Authors:  Arnaud Delorme; Scott Makeig
Journal:  J Neurosci Methods       Date:  2004-03-15       Impact factor: 2.390

5.  Optimizing the fMRI data-processing pipeline using prediction and reproducibility performance metrics: I. A preliminary group analysis.

Authors:  Stephen Strother; Stephen La Conte; Lars Kai Hansen; Jon Anderson; Jin Zhang; Sujit Pulapura; David Rottenberg
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

Review 6.  Report on a multicenter fMRI quality assurance protocol.

Authors:  Lee Friedman; Gary H Glover
Journal:  J Magn Reson Imaging       Date:  2006-06       Impact factor: 4.813

7.  Meta-analyzing left hemisphere language areas: phonology, semantics, and sentence processing.

Authors:  M Vigneau; V Beaucousin; P Y Hervé; H Duffau; F Crivello; O Houdé; B Mazoyer; N Tzourio-Mazoyer
Journal:  Neuroimage       Date:  2006-01-18       Impact factor: 6.556

8.  Can cognitive processes be inferred from neuroimaging data?

Authors:  Russell A Poldrack
Journal:  Trends Cogn Sci       Date:  2006-01-06       Impact factor: 20.229

9.  A core system for the implementation of task sets.

Authors:  Nico U F Dosenbach; Kristina M Visscher; Erica D Palmer; Francis M Miezin; Kristin K Wenger; Hyunseon C Kang; E Darcy Burgund; Ansley L Grimes; Bradley L Schlaggar; Steven E Petersen
Journal:  Neuron       Date:  2006-06-01       Impact factor: 17.173

10.  Why most published research findings are false.

Authors:  John P A Ioannidis
Journal:  PLoS Med       Date:  2005-08-30       Impact factor: 11.613

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  13 in total

1.  Rigor and reproducibility in rodent behavioral research.

Authors:  Maria Gulinello; Heather A Mitchell; Qiang Chang; W Timothy O'Brien; Zhaolan Zhou; Ted Abel; Li Wang; Joshua G Corbin; Surabi Veeraragavan; Rodney C Samaco; Nick A Andrews; Michela Fagiolini; Toby B Cole; Thomas M Burbacher; Jacqueline N Crawley
Journal:  Neurobiol Learn Mem       Date:  2018-01-04       Impact factor: 2.877

2.  Analytical Transparency and Reproducibility in Human Neuroimaging Studies.

Authors:  Marina Picciotto
Journal:  J Neurosci       Date:  2018-04-04       Impact factor: 6.167

Review 3.  Blueprints for measuring natural behavior.

Authors:  Alicja Puścian; Ewelina Knapska
Journal:  iScience       Date:  2022-06-18

4.  Bridging the Brain and Data Sciences.

Authors:  John Darrell Van Horn
Journal:  Big Data       Date:  2020-11-18       Impact factor: 4.426

5.  Advances in Studying Brain Morphology: The Benefits of Open-Access Data.

Authors:  Christopher R Madan
Journal:  Front Hum Neurosci       Date:  2017-08-04       Impact factor: 3.169

6.  Developmental cognitive neuroscience initiatives for advancements in methodological approaches: Registered Reports and Next-Generation Tools.

Authors:  Jennifer H Pfeifer; Sara J Weston
Journal:  Dev Cogn Neurosci       Date:  2020-05-18       Impact factor: 6.464

Review 7.  Why Study the History of Neuroscience?

Authors:  Richard E Brown
Journal:  Front Behav Neurosci       Date:  2019-05-22       Impact factor: 3.558

8.  Direct replication of task-dependent neural activation patterns during sadness introspection in two independent adolescent samples.

Authors:  Veronika Vilgis; Shawn A Rhoads; David G Weissman; Kristina L Gelardi; Erika E Forbes; Alison E Hipwell; Kate Keenan; Paul D Hastings; Amanda E Guyer
Journal:  Hum Brain Mapp       Date:  2019-10-22       Impact factor: 5.038

9.  Questionable research practices in student final theses - Prevalence, attitudes, and the role of the supervisor's perceived attitudes.

Authors:  Anand Krishna; Sebastian M Peter
Journal:  PLoS One       Date:  2018-08-30       Impact factor: 3.240

Review 10.  Dynamics of cumulative advantage and threats to equity in open science: a scoping review.

Authors:  Tony Ross-Hellauer; Stefan Reichmann; Nicki Lisa Cole; Angela Fessl; Thomas Klebel; Nancy Pontika
Journal:  R Soc Open Sci       Date:  2022-01-19       Impact factor: 2.963

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