Literature DB >> 28461317

In Vitro Evaluation of Antileishmanial Activity of Computationally Screened Compounds against Ascorbate Peroxidase To Combat Amphotericin B Drug Resistance.

Rani Mansuri1,2, Ashish Kumar3, Sindhuprava Rana1, Bhavana Panthi2, M Yousuf Ansari1,2, Sushmita Das4, Manas Ranjan Dikhit1, Ganesh Chandra Sahoo5, Pradeep Das6.   

Abstract

In visceral leishmaniasis (VL), the host macrophages generate oxidative stress to destroy the pathogen, while Leishmania combats the harmful effect of radicals by redox homeostasis through its unique trypanothione cascade. Leishmania donovani ascorbate peroxidase (LdAPx) is a redox enzyme that regulates the trypanothione cascade and detoxifies the effect of H2O2 The absence of an LdAPx homologue in humans makes it an excellent drug target. In this study, the homology model of LdAPx was built, including heme, and diverse compounds were prefiltered (PAINS, ADMET, and Lipinski's rule of five) and thereafter screened against the LdAPx model. Compounds having good affinity in terms of the Glide XP (extra precision) score were clustered to select diverse compounds for experimental validation. A total of 26 cluster representatives were procured and tested on promastigote culture, yielding 12 compounds with good antileishmanial activity. Out of them, six compounds were safer on the BALB/c peritoneal macrophages and were also effective against disease-causing intracellular amastigotes. Three out of six compounds inhibited recombinant LdAPx in a noncompetitive manner and also demonstrated partial reversion of the resistance property in an amphotericin B (AmB)-resistant strain, which may be due to an increased level of reactive oxygen species (ROS) and decrease of glutathione (GSH) content. However, inhibition of LdAPx in resistant parasites enhanced annexin V staining and activation of metacaspase-like protease activity, which may help in DNA fragmentation and apoptosis-like cell death. Thus, the present study will help in the search for specific hits and templates of potential therapeutic interest and therefore may facilitate the development of new drugs for combination therapy against VL.
Copyright © 2017 American Society for Microbiology.

Entities:  

Keywords:  apoptosis; ascorbate peroxidase; enzymatic assay; inhibitors; leishmania; phylogenetic analysis; virtual screening and docking

Mesh:

Substances:

Year:  2017        PMID: 28461317      PMCID: PMC5487621          DOI: 10.1128/AAC.02429-16

Source DB:  PubMed          Journal:  Antimicrob Agents Chemother        ISSN: 0066-4804            Impact factor:   5.191


  53 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Do structurally similar molecules have similar biological activity?

Authors:  Yvonne C Martin; James L Kofron; Linda M Traphagen
Journal:  J Med Chem       Date:  2002-09-12       Impact factor: 7.446

3.  Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes.

Authors:  Richard A Friesner; Robert B Murphy; Matthew P Repasky; Leah L Frye; Jeremy R Greenwood; Thomas A Halgren; Paul C Sanschagrin; Daniel T Mainz
Journal:  J Med Chem       Date:  2006-10-19       Impact factor: 7.446

4.  Using Dali for structural comparison of proteins.

Authors:  Liisa Holm; Sakari Kääriäinen; Chris Wilton; Dariusz Plewczynski
Journal:  Curr Protoc Bioinformatics       Date:  2006-07

5.  New substructure filters for removal of pan assay interference compounds (PAINS) from screening libraries and for their exclusion in bioassays.

Authors:  Jonathan B Baell; Georgina A Holloway
Journal:  J Med Chem       Date:  2010-04-08       Impact factor: 7.446

Review 6.  Life in vacuoles--nutrient acquisition by Leishmania amastigotes.

Authors:  R J Burchmore; M P Barrett
Journal:  Int J Parasitol       Date:  2001-10       Impact factor: 3.981

7.  Trypanosoma cruzi expresses a plant-like ascorbate-dependent hemoperoxidase localized to the endoplasmic reticulum.

Authors:  Shane R Wilkinson; Samson O Obado; Isabel L Mauricio; John M Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-26       Impact factor: 11.205

8.  Mechanism of inactivation of the polyene antibiotic amphotericin B. Evidence for radical formation in the process of autooxidation.

Authors:  M T Lamy-Freund; V F Ferreira; S Schreier
Journal:  J Antibiot (Tokyo)       Date:  1985-06       Impact factor: 2.649

9.  Ascorbate peroxidase, a key molecule regulating amphotericin B resistance in clinical isolates of Leishmania donovani.

Authors:  Ashish Kumar; Sushmita Das; Bidyut Purkait; Abul Hasan Sardar; Ayan Kumar Ghosh; Manas Ranjan Dikhit; Kumar Abhishek; Pradeep Das
Journal:  Antimicrob Agents Chemother       Date:  2014-08-11       Impact factor: 5.938

10.  Inhibitor designing, virtual screening, and docking studies for methyltransferase: A potential target against dengue virus.

Authors:  Jagbir Singh; Mahesh Kumar; Rani Mansuri; Ganesh Chandra Sahoo; Aakash Deep
Journal:  J Pharm Bioallied Sci       Date:  2016 Jul-Sep
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  2 in total

1.  Leishmanicidal Activity of an In Silico-Screened Novel Inhibitor against Ascorbate Peroxidase of Leishmania donovani.

Authors:  Mohammad Kashif; Ankush Paladhi; Ranjeet Singh; Sankar Bhattacharyya; Sumit Kumar Hira; Partha Pratim Manna
Journal:  Antimicrob Agents Chemother       Date:  2020-06-23       Impact factor: 5.191

2.  The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response.

Authors:  Manas Ranjan Dikhit; Sushmita Das; Vijaya Mahantesh; Akhilesh Kumar; Ashish Kumar Singh; Budheswar Dehury; Ajaya Kumar Rout; Vahab Ali; Ganesh Chandra Sahoo; Roshan Kamal Topno; Krishna Pandey; V N R Das; Sanjiva Bimal; Pradeep Das
Journal:  Sci Rep       Date:  2018-09-21       Impact factor: 4.379

  2 in total

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