Literature DB >> 28456924

Genomic recombination in primate bocavirus: inconsistency and alternative interpretations.

Yee Ling Chong1, Kar Hon Ng2.   

Abstract

Human bocavirus (HBoV) is a single-stranded DNA virus in Parvoviridae family, causing respiratory diseases in human. The recent identifications of genomic recombination among the four human bocavirus genotypes and related non-human primate bocaviruses have shed lights into the evolutionary processes underpinning the diversity of primate bocavirus. Among these reports, however, we found inconsistency and possible alternative interpretations of the recombination events. In this study, these recombination events were reviewed, and the related genome sequences were re-analysed, aiming to inform the research community of bocavirus with more consistent knowledge and comprehensive interpretations on the recombination history of primate bocavirus.

Entities:  

Keywords:  Bocavirus; Evolution; Primate; Recombination

Mesh:

Year:  2017        PMID: 28456924     DOI: 10.1007/s11262-017-1459-6

Source DB:  PubMed          Journal:  Virus Genes        ISSN: 0920-8569            Impact factor:   2.332


  16 in total

1.  Cloning of a human parvovirus by molecular screening of respiratory tract samples.

Authors:  Tobias Allander; Martti T Tammi; Margareta Eriksson; Annelie Bjerkner; Annika Tiveljung-Lindell; Björn Andersson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-23       Impact factor: 11.205

2.  A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints.

Authors:  D P Martin; D Posada; K A Crandall; C Williamson
Journal:  AIDS Res Hum Retroviruses       Date:  2005-01       Impact factor: 2.205

3.  Molecular epidemiology and clinical severity of Human Bocavirus (HBoV) 1-4 in children with acute gastroenteritis from Pune, Western India.

Authors:  Neha Lasure; Varanasi Gopalkrishna
Journal:  J Med Virol       Date:  2016-07-11       Impact factor: 2.327

4.  Genomic features of the human bocaviruses.

Authors:  Oliver Schildgen; Jianming Qiu; Maria Söderlund-Venermo
Journal:  Future Virol       Date:  2012-01-01       Impact factor: 1.831

5.  Evolutionary time-scale of primate bocaviruses.

Authors:  Igor V Babkin; Alexander I Tyumentsev; Artem Yu Tikunov; Alexander M Kurilshikov; Elena I Ryabchikova; Elena V Zhirakovskaya; Sergei V Netesov; Nina V Tikunova
Journal:  Infect Genet Evol       Date:  2013-01-08       Impact factor: 3.342

6.  Phylogenetic and recombination analysis of human bocavirus 2.

Authors:  Weixia Cheng; Jinan Chen; Ziqian Xu; Jiemei Yu; Canping Huang; Miao Jin; Huiying Li; Ming Zhang; Yu Jin; Zhao-Jun Duan
Journal:  BMC Infect Dis       Date:  2011-02-24       Impact factor: 3.090

7.  RDP3: a flexible and fast computer program for analyzing recombination.

Authors:  Darren P Martin; Philippe Lemey; Martin Lott; Vincent Moulton; David Posada; Pierre Lefeuvre
Journal:  Bioinformatics       Date:  2010-08-26       Impact factor: 6.937

8.  Identification and characterization of a new bocavirus species in gorillas.

Authors:  Amit Kapoor; Natasha Mehta; Frank Esper; Mateja Poljsak-Prijatelj; Phenix-Lan Quan; Natasha Qaisar; Eric Delwart; W Ian Lipkin
Journal:  PLoS One       Date:  2010-07-23       Impact factor: 3.240

9.  Bocavirus episome in infected human tissue contains non-identical termini.

Authors:  Amit Kapoor; Mady Hornig; Aravind Asokan; Brent Williams; Jose A Henriquez; W Ian Lipkin
Journal:  PLoS One       Date:  2011-06-28       Impact factor: 3.240

10.  MUSCLE: a multiple sequence alignment method with reduced time and space complexity.

Authors:  Robert C Edgar
Journal:  BMC Bioinformatics       Date:  2004-08-19       Impact factor: 3.169

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  2 in total

1.  Description of a human Bocavirus recombinant strain in the Americas.

Authors:  Matías Salvo; Daiana Mir; Luis Fernando López Tort; Andrés Lizasoain; Rodney Colina; Matías Victoria
Journal:  Mem Inst Oswaldo Cruz       Date:  2019-10-21       Impact factor: 2.743

2.  Detection and genetic characterization of feline bocavirus in Northeast China.

Authors:  Shushuai Yi; Jiangting Niu; Hualei Wang; Guoying Dong; Yanli Zhao; Hao Dong; Yanbing Guo; Kai Wang; Guixue Hu
Journal:  Virol J       Date:  2018-08-08       Impact factor: 4.099

  2 in total

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