Literature DB >> 28455579

[New microbiological techniques].

S Schubert1, A Wieser2,3,4, G Bonkat5.   

Abstract

Microbiological diagnostic procedures have changed rapidly in recent years. This is especially true in the field of molecular diagnostics. Classical culture-based techniques are still the gold standard in many areas; however, they are already complemented by automated and also molecular techniques to guarantee faster and better quality results. The most commonly used techniques include real-time polymerase chain reaction (RT-PCR) based systems and nucleic acid hybridization. These procedures are used most powerfully from direct patient samples or in assays to detect the presence of nonculturable or fastidious organisms. Further techniques such as DNA sequencing are not yet used routinely for urological samples and can be considered experimental. However, in conjunction with dropping prices and further technical developments, these techniques promise to be used much more in the near future. Regarding bacterial identification from culture, mass spectrometry (MALDI-TOF MS) has become the technique of choice in recent years especially in Europe. It has tremendously shortened the time to result. This is now going to be extended to antibiotic susceptibility testing. This is of paramount importance in view of ever rising antimicrobial resistance rates. Techniques described in this review offer a faster and better microbiological diagnosis. Such continuous improvements are critical especially in times of cost pressure and rising antimicrobial resistance rates. It is in our interest to provide the best possible care for patients and in this regard a good and effective communication between the laboratory and the clinician is of vital importance.

Entities:  

Keywords:  Hybridization; Mass spectrometry; Polymerase chain reaction; Sequencing; Urinary tract infection

Mesh:

Year:  2017        PMID: 28455579     DOI: 10.1007/s00120-017-0395-3

Source DB:  PubMed          Journal:  Urologe A        ISSN: 0340-2592            Impact factor:   0.639


  21 in total

Review 1.  Next-generation and whole-genome sequencing in the diagnostic clinical microbiology laboratory.

Authors:  W M Dunne; L F Westblade; B Ford
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2012-06-08       Impact factor: 3.267

Review 2.  New nonculture-based methods for the diagnosis of invasive candidiasis.

Authors:  Jacques Bille
Journal:  Curr Opin Crit Care       Date:  2010-10       Impact factor: 3.687

3.  Rapid detection of antibiotic resistance based on mass spectrometry and stable isotopes.

Authors:  J S Jung; T Eberl; K Sparbier; C Lange; M Kostrzewa; S Schubert; A Wieser
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2013-12-14       Impact factor: 3.267

4.  Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry.

Authors:  Piseth Seng; Michel Drancourt; Frédérique Gouriet; Bernard La Scola; Pierre-Edouard Fournier; Jean Marc Rolain; Didier Raoult
Journal:  Clin Infect Dis       Date:  2009-08-15       Impact factor: 9.079

Review 5.  Molecular diagnostic in infectious disease pathology: an update.

Authors:  Gieri Cathomas
Journal:  Ann Pathol       Date:  2009-10-02       Impact factor: 0.407

6.  Evaluation of matrix-assisted laser desorption ionization-time of flight mass spectrometry for rapid detection of β-lactam resistance in Enterobacteriaceae derived from blood cultures.

Authors:  Jette Sophia Jung; Christina Popp; Katrin Sparbier; Christoph Lange; Markus Kostrzewa; Soeren Schubert
Journal:  J Clin Microbiol       Date:  2014-01-08       Impact factor: 5.948

7.  Novel, improved sample preparation for rapid, direct identification from positive blood cultures using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry.

Authors:  Sören Schubert; Kirsten Weinert; Chris Wagner; Beatrix Gunzl; Andreas Wieser; Thomas Maier; Markus Kostrzewa
Journal:  J Mol Diagn       Date:  2011-09-01       Impact factor: 5.568

Review 8.  Real-time PCR as a diagnostic tool for bacterial diseases.

Authors:  Max Maurin
Journal:  Expert Rev Mol Diagn       Date:  2012-09       Impact factor: 5.225

Review 9.  Molecular diagnostics in tuberculosis: basis and implications for therapy.

Authors:  Seetha V Balasingham; Tonje Davidsen; Irena Szpinda; Stephan A Frye; Tone Tønjum
Journal:  Mol Diagn Ther       Date:  2009       Impact factor: 4.074

Review 10.  Molecular diagnostics for detection of bacterial and viral pathogens in community-acquired pneumonia.

Authors:  Frederick S Nolte
Journal:  Clin Infect Dis       Date:  2008-12-01       Impact factor: 9.079

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