Literature DB >> 2845405

Algorithms for the restriction-site mapping of DNA molecules.

M Krawczak1.   

Abstract

Two algorithms are described that rapidly construct restriction maps of DNA molecules from single- and double-digest data. The implementation of these algorithms into the Pascal programs AMAPK and AMARD allows such mapping to be done on microcomputers.

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Year:  1988        PMID： 2845405      PMCID： PMC282173          DOI： 10.1073/pnas.85.19.7298

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  10 in total

1.  Mapping of closed circular DNAs by cleavage with restriction endonucleases and calibration by agarose gel electrophoresis.

Authors:  R C Parker; R M Watson; J Vinograd
Journal:  Proc Natl Acad Sci U S A       Date:  1977-03       Impact factor: 11.205

2.  Measurement of DNA length by gel electrophoresis.

Authors:  E M Southern
Journal:  Anal Biochem       Date:  1979-12       Impact factor: 3.365

3.  Construction of restriction maps.

Authors:  B Bellon
Journal:  Comput Appl Biosci       Date:  1988-03

4.  A simple method for DNA restriction site mapping.

Authors:  H O Smith; M L Birnstiel
Journal:  Nucleic Acids Res       Date:  1976-09       Impact factor: 16.971

5.  Measurement of DNA length by gel electrophoresis. I. Improved accuracy of mobility measurements using a digital microdensitometer and computer processing.

Authors:  J K Elder; A Amos; E M Southern; G A Shippey
Journal:  Anal Biochem       Date:  1983-01       Impact factor: 3.365

6.  Automatic construction of restriction site maps.

Authors:  W R Pearson
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

7.  Plasmid mapping computer program.

Authors:  G P Nolan; C V Maina; A A Szalay
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

8.  An efficient program to construct restriction maps from experimental data with realistic error levels.

Authors:  R Durand; F Bregegere
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

9.  PMAP, PMAPS: DNA physical map constructing programs.

Authors:  G Polner; L Dorgai; L Orosz
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

10.  Measurement of DNA length by gel electrophoresis II: Comparison of methods for relating mobility to fragment length.

Authors:  J K Elder; E M Southern
Journal:  Anal Biochem       Date:  1983-01       Impact factor: 3.365
  10 in total
  2 in total

1.  The evolutionary relationships of two families of cottoid fishes of Lake Baikal (east Siberia) as suggested by analysis of mitochondrial DNA.

Authors:  S V Kirilchik; M E Pavlova; S I Belikov; A L Novitsky
Journal:  J Mol Evol       Date:  1995-04       Impact factor: 2.395

2.  Cellular gels. Purifying and mapping long DNA molecules.

Authors:  P H Dear; P R Cook
Journal:  Biochem J       Date:  1991-02-01       Impact factor: 3.857
  2 in total

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