Literature DB >> 28453680

The genetic map comparator: a user-friendly application to display and compare genetic maps.

Yan Holtz1, Jacques Léon David1, Vincent Ranwez1.   

Abstract

Motivation: Marker-assisted selection strongly relies on genetic maps to accelerate breeding programs. High-density maps are now available for numerous species. Dedicated tools are required to compare several high-density maps on the basis of their key characteristics, while pinpointing their differences and similarities.
Results: We developed the Genetic Map Comparator-a web-based application for easy comparison of different maps according to their key statistics and the relative positions of common markers. Availability and Implementation: The Genetic Map Comparator is available online at: http://bioweb.supagro.inra.fr/geneticMapComparator. The source code is freely available on GitHub under the under the CeCILL general public license: https://github.com/holtzy/GenMap-Comparator. Contact: Holtz@supagro.fr; Ranwez@supagro.fr.
© The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Mesh:

Year:  2017        PMID: 28453680     DOI: 10.1093/bioinformatics/btw816

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  7 in total

1.  Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps.

Authors:  Katheryn Buble; Sook Jung; Jodi L Humann; Jing Yu; Chun-Huai Cheng; Taein Lee; Stephen P Ficklin; Heidi Hough; Bradford Condon; Margaret E Staton; Jill L Wegrzyn; Dorrie Main
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

2.  The evolution of huge Y chromosomes in Coccinia grandis and its sister, Coccinia schimperi.

Authors:  Bohuslav Janousek; Roman Gogela; Vaclav Bacovsky; Susanne S Renner
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-03-21       Impact factor: 6.237

3.  Identification of QTLs for Reduced Susceptibility to Rose Rosette Disease in Diploid Roses.

Authors:  Ellen L Young; Jeekin Lau; Nolan B Bentley; Zena Rawandoozi; Sara Collins; Mark T Windham; Patricia E Klein; David H Byrne; Oscar Riera-Lizarazu
Journal:  Pathogens       Date:  2022-06-08

4.  Epistatic determinism of durum wheat resistance to the wheat spindle streak mosaic virus.

Authors:  Yan Holtz; Michel Bonnefoy; Véronique Viader; Morgane Ardisson; Nicolas O Rode; Gérard Poux; Pierre Roumet; Véronique Marie-Jeanne; Vincent Ranwez; Sylvain Santoni; David Gouache; Jacques L David
Journal:  Theor Appl Genet       Date:  2017-04-27       Impact factor: 5.699

5.  A high-density intraspecific SNP linkage map of pigeonpea (Cajanas cajan L. Millsp.).

Authors:  Sheetal Arora; Ajay Kumar Mahato; Sangeeta Singh; Paritra Mandal; Shefali Bhutani; Sutapa Dutta; Giriraj Kumawat; Bikram Pratap Singh; A K Chaudhary; Rekha Yadav; K Gaikwad; Amitha Mithra Sevanthi; Subhojit Datta; Ranjeet S Raje; Tilak R Sharma; Nagendra Kumar Singh
Journal:  PLoS One       Date:  2017-06-27       Impact factor: 3.240

6.  Efficient algorithms for Longest Common Subsequence of two bucket orders to speed up pairwise genetic map comparison.

Authors:  Lisa De Mattéo; Yan Holtz; Vincent Ranwez; Sèverine Bérard
Journal:  PLoS One       Date:  2018-12-27       Impact factor: 3.240

7.  Rose Rosette Disease Resistance Loci Detected in Two Interconnected Tetraploid Garden Rose Populations.

Authors:  Jeekin Lau; Ellen L Young; Sara Collins; Mark T Windham; Patricia E Klein; David H Byrne; Oscar Riera-Lizarazu
Journal:  Front Plant Sci       Date:  2022-07-07       Impact factor: 6.627

  7 in total

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