Literature DB >> 28453670

GppFst: genomic posterior predictive simulations of FST and dXY for identifying outlier loci from population genomic data.

Richard H Adams1, Drew R Schield1, Daren C Card1, Heath Blackmon2, Todd A Castoe1.   

Abstract

Summary: We introduce GppFst, an open source R package that generates posterior predictive distributions of FST and dx under a neutral coalescent model to identify putative targets of selection from genomic data. Availability and Implementation: GppFst is available at ( https://github.com/radamsRHA/GppFst ). Contact: todd.castoe@uta.edu. Supplementary information: Supplementary data are available at Bioinformatics online.
© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Mesh：

Year:  2017        PMID： 28453670     DOI： 10.1093/bioinformatics/btw795

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  3 in total

1.  Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes.

Authors:  Drew R Schield; Richard H Adams; Daren C Card; Blair W Perry; Giulia M Pasquesi; Tereza Jezkova; Daniel M Portik; Audra L Andrew; Carol L Spencer; Elda E Sanchez; Matthew K Fujita; Stephen P Mackessy; Todd A Castoe
Journal:  Ecol Evol       Date:  2017-04-23       Impact factor: 2.912

2.  Genomic Basis of Convergent Island Phenotypes in Boa Constrictors.

Authors:  Daren C Card; Richard H Adams; Drew R Schield; Blair W Perry; Andrew B Corbin; Giulia I M Pasquesi; Kristopher Row; Melissa J Van Kleeck; Juan M Daza; Warren Booth; Chad E Montgomery; Scott M Boback; Todd A Castoe
Journal:  Genome Biol Evol       Date:  2019-11-01       Impact factor: 3.416

3.  Comparative Population Genomics of Cryptic Speciation and Adaptive Divergence in Bicknell's and Gray-Cheeked Thrushes (Aves: Catharus bicknelli and Catharus minimus).

Authors:  Flavia Termignoni-Garcia; Jeremy J Kirchman; Johnathan Clark; Scott V Edwards
Journal:  Genome Biol Evol       Date:  2022-01-04       Impact factor: 3.416
  3 in total

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