Literature DB >> 28451740

Precision toxicology based on single cell sequencing: an evolving trend in toxicological evaluations and mechanism exploration.

Boyang Zhang1,2, Kunlun Huang1,2, Liye Zhu1,2, Yunbo Luo1,2, Wentao Xu3,4.   

Abstract

In this review, we introduce a new concept, precision toxicology: the mode of action of chemical- or drug-induced toxicity can be sensitively and specifically investigated by isolating a small group of cells or even a single cell with typical phenotype of interest followed by a single cell sequencing-based analysis. Precision toxicology can contribute to the better detection of subtle intracellular changes in response to exogenous substrates, and thus help researchers find solutions to control or relieve the toxicological effects that are serious threats to human health. We give examples for single cell isolation and recommend laser capture microdissection for in vivo studies and flow cytometric sorting for in vitro studies. In addition, we introduce the procedures for single cell sequencing and describe the expected application of these techniques to toxicological evaluations and mechanism exploration, which we believe will become a trend in toxicology.

Entities:  

Keywords:  Cell isolation; Phenotype focusing; Precision toxicology; Single cell sequencing

Mesh:

Year:  2017        PMID: 28451740     DOI: 10.1007/s00204-017-1971-4

Source DB:  PubMed          Journal:  Arch Toxicol        ISSN: 0340-5761            Impact factor:   5.153


  5 in total

1.  Embracing Systems Toxicology at Single-Cell Resolution.

Authors:  Qiang Zhang; W Michael Caudle; Jingbo Pi; Sudin Bhattacharya; Melvin E Andersen; Norbert E Kaminski; Rory B Conolly
Journal:  Curr Opin Toxicol       Date:  2019-04-19

2.  An in vitro attempt at precision toxicology reveals the involvement of DNA methylation alteration in ochratoxin A-induced G0/G1 phase arrest.

Authors:  Boyang Zhang; Liye Zhu; Yaqi Dai; Hongyu Li; Kunlun Huang; Yunbo Luo; Wentao Xu
Journal:  Epigenetics       Date:  2019-07-22       Impact factor: 4.528

3.  Development of a ZnCdS@ZnS quantum dots-based label-free electrochemiluminescence immunosensor for sensitive determination of aflatoxin B1 in lotus seed.

Authors:  Chaonan Sun; Xiaofang Liao; Boyu Jia; Linchun Shi; Dingkun Zhang; Ruilin Wang; Lidong Zhou; Weijun Kong
Journal:  Mikrochim Acta       Date:  2020-03-18       Impact factor: 5.833

4.  Single-cell transcriptomics uncovers potential marker genes of ochratoxin A-sensitive renal cells in an acute toxicity rat model.

Authors:  Boyang Zhang; Hongyu Li; Liye Zhu; Xiaoyun He; Haoshu Luo; Kunlun Huang; Wentao Xu
Journal:  Cell Biol Toxicol       Date:  2020-05-28       Impact factor: 6.691

5.  The Carcinogenome Project: In Vitro Gene Expression Profiling of Chemical Perturbations to Predict Long-Term Carcinogenicity.

Authors:  Amy Li; Xiaodong Lu; Ted Natoli; Joshua Bittker; Nisha S Sipes; Aravind Subramanian; Scott Auerbach; David H Sherr; Stefano Monti
Journal:  Environ Health Perspect       Date:  2019-04       Impact factor: 9.031

  5 in total

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