Literature DB >> 28450643

Ancient genomic changes associated with domestication of the horse.

Pablo Librado1, Cristina Gamba1, Charleen Gaunitz1, Clio Der Sarkissian1, Mélanie Pruvost2, Anders Albrechtsen3, Antoine Fages1,4, Naveed Khan1,5, Mikkel Schubert1, Vidhya Jagannathan6, Aitor Serres-Armero7,8, Lukas F K Kuderna7,8, Inna S Povolotskaya7,8, Andaine Seguin-Orlando1,9, Sébastien Lepetz10, Markus Neuditschko11, Catherine Thèves4, Saleh Alquraishi12, Ahmed H Alfarhan12, Khaled Al-Rasheid12, Stefan Rieder11, Zainolla Samashev13, Henri-Paul Francfort14, Norbert Benecke15, Michael Hofreiter16, Arne Ludwig17, Christine Keyser4,18, Tomas Marques-Bonet7,8,19, Bertrand Ludes4,20, Eric Crubézy4, Tosso Leeb6, Eske Willerslev1, Ludovic Orlando21,4.   

Abstract

The genomic changes underlying both early and late stages of horse domestication remain largely unknown. We examined the genomes of 14 early domestic horses from the Bronze and Iron Ages, dating to between ~4.1 and 2.3 thousand years before present. We find early domestication selection patterns supporting the neural crest hypothesis, which provides a unified developmental origin for common domestic traits. Within the past 2.3 thousand years, horses lost genetic diversity and archaic DNA tracts introgressed from a now-extinct lineage. They accumulated deleterious mutations later than expected under the cost-of-domestication hypothesis, probably because of breeding from limited numbers of stallions. We also reveal that Iron Age Scythian steppe nomads implemented breeding strategies involving no detectable inbreeding and selection for coat-color variation and robust forelimbs.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 28450643     DOI: 10.1126/science.aam5298

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  47 in total

1.  MHC haplotype diversity in Persian Arabian horses determined using polymorphic microsatellites.

Authors:  R Sadeghi; Mohammad Moradi-Shahrbabak; S R Miraei Ashtiani; D C Miller; Douglas F Antczak
Journal:  Immunogenetics       Date:  2017-11-23       Impact factor: 2.846

2.  Identifying and Classifying Shared Selective Sweeps from Multilocus Data.

Authors:  Alexandre M Harris; Michael DeGiorgio
Journal:  Genetics       Date:  2020-03-09       Impact factor: 4.562

Review 3.  Domestication as a model system for the extended evolutionary synthesis.

Authors:  Melinda A Zeder
Journal:  Interface Focus       Date:  2017-08-18       Impact factor: 3.906

4.  Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.

Authors:  Gabriel Renaud; Kristian Hanghøj; Thorfinn Sand Korneliussen; Eske Willerslev; Ludovic Orlando
Journal:  Genetics       Date:  2019-05-14       Impact factor: 4.562

Review 5.  Harnessing ancient genomes to study the history of human adaptation.

Authors:  Stephanie Marciniak; George H Perry
Journal:  Nat Rev Genet       Date:  2017-09-11       Impact factor: 53.242

Review 6.  How human behavior can impact the evolution of genetically-mediated behavior in wild non-human species.

Authors:  George H Perry
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2020-03-23       Impact factor: 1.836

7.  Archaeogenomic evidence from the southwestern US points to a pre-Hispanic scarlet macaw breeding colony.

Authors:  Richard J George; Stephen Plog; Adam S Watson; Kari L Schmidt; Brendan J Culleton; Thomas K Harper; Patricia A Gilman; Steven A LeBlanc; George Amato; Peter Whiteley; Logan Kistler; Douglas J Kennett
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-13       Impact factor: 11.205

8.  863 genomes reveal the origin and domestication of chicken.

Authors:  Ming-Shan Wang; Mukesh Thakur; Min-Sheng Peng; Yu Jiang; Laurent Alain François Frantz; Ming Li; Jin-Jin Zhang; Sheng Wang; Joris Peters; Newton Otieno Otecko; Chatmongkon Suwannapoom; Xing Guo; Zhu-Qing Zheng; Ali Esmailizadeh; Nalini Yasoda Hirimuthugoda; Hidayat Ashari; Sri Suladari; Moch Syamsul Arifin Zein; Szilvia Kusza; Saeed Sohrabi; Hamed Kharrati-Koopaee; Quan-Kuan Shen; Lin Zeng; Min-Min Yang; Ya-Jiang Wu; Xing-Yan Yang; Xue-Mei Lu; Xin-Zheng Jia; Qing-Hua Nie; Susan Joy Lamont; Emiliano Lasagna; Simone Ceccobelli; Humpita Gamaralalage Thilini Nisanka Gunwardana; Thilina Madusanka Senasige; Shao-Hong Feng; Jing-Fang Si; Hao Zhang; Jie-Qiong Jin; Ming-Li Li; Yan-Hu Liu; Hong-Man Chen; Cheng Ma; Shan-Shan Dai; Abul Kashem Fazlul Haque Bhuiyan; Muhammad Sajjad Khan; Gamamada Liyanage Lalanie Pradeepa Silva; Thi-Thuy Le; Okeyo Ally Mwai; Mohamed Nawaz Mohamed Ibrahim; Megan Supple; Beth Shapiro; Olivier Hanotte; Guojie Zhang; Greger Larson; Jian-Lin Han; Dong-Dong Wu; Ya-Ping Zhang
Journal:  Cell Res       Date:  2020-06-25       Impact factor: 25.617

Review 9.  Animal domestication in the era of ancient genomics.

Authors:  Laurent A F Frantz; Daniel G Bradley; Greger Larson; Ludovic Orlando
Journal:  Nat Rev Genet       Date:  2020-04-07       Impact factor: 53.242

10.  Large-scale genomic analysis reveals the genetic cost of chicken domestication.

Authors:  Ming-Shan Wang; Jin-Jin Zhang; Xing Guo; Ming Li; Rachel Meyer; Hidayat Ashari; Zhu-Qing Zheng; Sheng Wang; Min-Sheng Peng; Yu Jiang; Mukesh Thakur; Chatmongkon Suwannapoom; Ali Esmailizadeh; Nalini Yasoda Hirimuthugoda; Moch Syamsul Arifin Zein; Szilvia Kusza; Hamed Kharrati-Koopaee; Lin Zeng; Yun-Mei Wang; Ting-Ting Yin; Min-Min Yang; Ming-Li Li; Xue-Mei Lu; Emiliano Lasagna; Simone Ceccobelli; Humpita Gamaralalage Thilini Nisanka Gunwardana; Thilina Madusanka Senasig; Shao-Hong Feng; Hao Zhang; Abul Kashem Fazlul Haque Bhuiyan; Muhammad Sajjad Khan; Gamamada Liyanage Lalanie Pradeepa Silva; Le Thi Thuy; Okeyo A Mwai; Mohamed Nawaz Mohamed Ibrahim; Guojie Zhang; Kai-Xing Qu; Olivier Hanotte; Beth Shapiro; Mirte Bosse; Dong-Dong Wu; Jian-Lin Han; Ya-Ping Zhang
Journal:  BMC Biol       Date:  2021-06-16       Impact factor: 7.431

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