Literature DB >> 28449042

Long noncoding RNA: a crosslink in biological regulatory network.

Yuwei Zhang1, Yang Tao1, Qi Liao1.   

Abstract

Long noncoding RNAs (lncRNAs) had been defined as a novel class of functional RNAs longer than 200 nucleotides around a decade ago. It is widely acknowledged that lncRNAs play a significant role in regulation of gene expression, but the biological and molecular mechanisms are diverse and complex, and remain to be determined. Especially, the regulatory network of lncRNAs associated with other biological molecules is still a controversial matter, thus becoming a new frontier of the studies on transcriptome. Recent advance in high-throughput sequencing technologies and bioinformatics approaches may be an accelerator to lift the mysterious veil. In this review, we will outline well-known associations between lncRNAs and other biological molecules, demonstrate the diverse bioinformatics approaches applied in prediction and analysis of lncRNA interaction and perform a case study for lncRNA linc00460 to concretely decipher the lncRNA regulatory network.

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Year:  2018        PMID: 28449042     DOI: 10.1093/bib/bbx042

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  37 in total

1.  The long non-coding RNA SUMO1P3 facilitates breast cancer progression by negatively regulating miR-320a.

Authors:  Jie Liu; Zhiwang Song; Chan Feng; Yonglin Lu; Yu Zhou; Yun Lin; Chunyan Dong
Journal:  Am J Transl Res       Date:  2017-12-15       Impact factor: 4.060

2.  Long non-coding RNA RNCR3 promotes prostate cancer progression through targeting miR-185-5p.

Authors:  Chuang Tian; Yuanyuan Deng; Yong Jin; Songshan Shi; Hai Bi
Journal:  Am J Transl Res       Date:  2018-05-15       Impact factor: 4.060

3.  Class similarity network for coding and long non-coding RNA classification.

Authors:  Yu Zhang; Yahui Long; Chee Keong Kwoh
Journal:  BMC Bioinformatics       Date:  2021-12-20       Impact factor: 3.169

4.  Illuminating lncRNA Function Through Target Prediction.

Authors:  Hua-Sheng Chiu; Sonal Somvanshi; Ting-Wen Chen; Pavel Sumazin
Journal:  Methods Mol Biol       Date:  2021

Review 5.  The role of N6-methyladenosine-modified non-coding RNAs in the pathological process of human cancer.

Authors:  Lin Luo; Yingwei Zhen; Dazhao Peng; Cheng Wei; Xiaoyang Zhang; Xianzhi Liu; Lei Han; Zhenyu Zhang
Journal:  Cell Death Discov       Date:  2022-07-18

Review 6.  The Intersection of Non-Coding RNAs Contributes to Forest Trees' Response to Abiotic Stress.

Authors:  Dandan Xiao; Min Chen; Xiaoqian Yang; Hai Bao; Yuzhang Yang; Yanwei Wang
Journal:  Int J Mol Sci       Date:  2022-06-07       Impact factor: 6.208

7.  The regulatory network analysis of long noncoding RNAs in human colorectal cancer.

Authors:  Yuwei Zhang; Yang Tao; Yang Li; Jinshun Zhao; Lina Zhang; Xiaohong Zhang; Changzheng Dong; Yangyang Xie; Xiaoyu Dai; Xinjun Zhang; Qi Liao
Journal:  Funct Integr Genomics       Date:  2018-01-26       Impact factor: 3.410

Review 8.  Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation.

Authors:  Xiangxiang Meng; Aixia Li; Bin Yu; Shengjun Li
Journal:  Comput Struct Biotechnol J       Date:  2021-04-27       Impact factor: 7.271

9.  Molecular Network-Based Identification of Competing Endogenous RNAs in Thyroid Carcinoma.

Authors:  Minjia Lu; Xingyu Xu; Baohang Xi; Qi Dai; Chenli Li; Li Su; Xiaonan Zhou; Min Tang; Yuhua Yao; Jialiang Yang
Journal:  Genes (Basel)       Date:  2018-01-19       Impact factor: 4.096

10.  Construction and investigation of lncRNA-associated ceRNA regulatory network in papillary thyroid cancer.

Authors:  Yangjing Zhao; Hui Wang; Chengjiang Wu; Meina Yan; Haojie Wu; Jingzhe Wang; Xinxin Yang; Qixiang Shao
Journal:  Oncol Rep       Date:  2018-01-10       Impact factor: 3.906

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