Literature DB >> 28444480

Model-based biotechnological potential analysis of Kluyveromyces marxianus central metabolism.

A Pentjuss1, E Stalidzans2, J Liepins1, A Kokina1, J Martynova1, P Zikmanis1, I Mozga1, R Scherbaka1, H Hartman3, M G Poolman3, D A Fell3, A Vigants1.   

Abstract

The non-conventional yeast Kluyveromyces marxianus is an emerging industrial producer for many biotechnological processes. Here, we show the application of a biomass-linked stoichiometric model of central metabolism that is experimentally validated, and mass and charge balanced for assessing the carbon conversion efficiency of wild type and modified K. marxianus. Pairs of substrates (lactose, glucose, inulin, xylose) and products (ethanol, acetate, lactate, glycerol, ethyl acetate, succinate, glutamate, phenylethanol and phenylalanine) are examined by various modelling and optimisation methods. Our model reveals the organism's potential for industrial application and metabolic engineering. Modelling results imply that the aeration regime can be used as a tool to optimise product yield and flux distribution in K. marxianus. Also rebalancing NADH and NADPH utilisation can be used to improve the efficiency of substrate conversion. Xylose is identified as a biotechnologically promising substrate for K. marxianus.

Entities:  

Keywords:  Central metabolism; Essentiality analysis; Kluyveromyces marxianus; Metabolic engineering; Modelling

Mesh:

Substances:

Year:  2017        PMID: 28444480     DOI: 10.1007/s10295-017-1946-8

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  90 in total

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3.  Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression.

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Journal:  J Biol Chem       Date:  2010-04-06       Impact factor: 5.157

5.  Sequential gene integration for the engineering of Kluyveromyces marxianus.

Authors:  Douglas C Pecota; Vineet Rajgarhia; Nancy A Da Silva
Journal:  J Biotechnol       Date:  2006-08-03       Impact factor: 3.307

6.  Limitations in xylose-fermenting Saccharomyces cerevisiae, made evident through comprehensive metabolite profiling and thermodynamic analysis.

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Journal:  Appl Environ Microbiol       Date:  2010-10-01       Impact factor: 4.792

7.  ScrumPy: metabolic modelling with Python.

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  5 in total

1.  Optimization of fermentation for γ-aminobutyric acid (GABA) production by yeast Kluyveromyces marxianus C21 in okara (soybean residue).

Authors:  Lei Zhang; Yang Yue; Xiujuan Wang; Weichang Dai; Chunhong Piao; Hansong Yu
Journal:  Bioprocess Biosyst Eng       Date:  2022-02-18       Impact factor: 3.210

2.  Integrative Gene Expression and Metabolic Analysis Tool IgemRNA.

Authors:  Kristina Grausa; Ivars Mozga; Karlis Pleiko; Agris Pentjuss
Journal:  Biomolecules       Date:  2022-04-16

3.  Kinetic and Stoichiometric Modeling-Based Analysis of Docosahexaenoic Acid (DHA) Production Potential by Crypthecodinium cohnii from Glycerol, Glucose and Ethanol.

Authors:  Kristaps Berzins; Reinis Muiznieks; Matiss R Baumanis; Inese Strazdina; Karlis Shvirksts; Santa Prikule; Vytautas Galvanauskas; Daniel Pleissner; Agris Pentjuss; Mara Grube; Uldis Kalnenieks; Egils Stalidzans
Journal:  Mar Drugs       Date:  2022-02-01       Impact factor: 5.118

Review 4.  Past, Present, and Future Perspectives on Whey as a Promising Feedstock for Bioethanol Production by Yeast.

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Review 5.  Model-based metabolism design: constraints for kinetic and stoichiometric models.

Authors:  Egils Stalidzans; Andrus Seiman; Karl Peebo; Vitalijs Komasilovs; Agris Pentjuss
Journal:  Biochem Soc Trans       Date:  2018-02-22       Impact factor: 5.407

  5 in total

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