Literature DB >> 28444387

Meiotic Genes Are Enriched in Regions of Reduced Archaic Ancestry.

B Jégou1,2,3, S Sankararaman4,5, A D Rolland1, D Reich6,7,8, F Chalmel1.   

Abstract

About 1-6% of the genetic ancestry of modern humans today originates from admixture with archaic humans. It has recently been shown that autosomal genomic regions with a reduced proportion of Neanderthal and Denisovan ancestries (NA and DA) are significantly enriched in genes that are more expressed in testis than in other tissues. To determine whether a cellular segregation pattern would exist, we combined maps of archaic introgression with a cross-analysis of three transcriptomic datasets deciphering the transcriptional landscape of human gonadal cell types. We reveal that the regions deficient in both NA and DA contain a significant enrichment of genes transcribed in meiotic germ cells. The interbreeding of anatomically modern humans with archaic humans may have introduced archaic-derived alleles that contributed to genetic incompatibilities affecting meiosis that were subsequently purged by natural selection.
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Entities:  

Keywords:  archaic hominin admixture; genetic incompatibilities; germ cells; meiosis; testis

Mesh:

Year:  2017        PMID: 28444387      PMCID: PMC5850719          DOI: 10.1093/molbev/msx141

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  38 in total

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Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

2.  DNA Demethylation Dynamics in the Human Prenatal Germline.

Authors:  Sofia Gkountela; Kelvin X Zhang; Tiasha A Shafiq; Wen-Wei Liao; Joseph Hargan-Calvopiña; Pao-Yang Chen; Amander T Clark
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3.  Identifying recent adaptations in large-scale genomic data.

Authors:  Sharon R Grossman; Kristian G Andersen; Ilya Shlyakhter; Shervin Tabrizi; Sarah Winnicki; Angela Yen; Daniel J Park; Dustin Griesemer; Elinor K Karlsson; Sunny H Wong; Moran Cabili; Richard A Adegbola; Rameshwar N K Bamezai; Adrian V S Hill; Fredrik O Vannberg; John L Rinn; Eric S Lander; Stephen F Schaffner; Pardis C Sabeti
Journal:  Cell       Date:  2013-02-14       Impact factor: 41.582

4.  A draft sequence of the Neandertal genome.

Authors:  Johannes Krause; Adrian W Briggs; Tomislav Maricic; Udo Stenzel; Martin Kircher; Nick Patterson; Richard E Green; Heng Li; Weiwei Zhai; Markus Hsi-Yang Fritz; Nancy F Hansen; Eric Y Durand; Anna-Sapfo Malaspinas; Jeffrey D Jensen; Tomas Marques-Bonet; Can Alkan; Kay Prüfer; Matthias Meyer; Hernán A Burbano; Jeffrey M Good; Rigo Schultz; Ayinuer Aximu-Petri; Anne Butthof; Barbara Höber; Barbara Höffner; Madlen Siegemund; Antje Weihmann; Chad Nusbaum; Eric S Lander; Carsten Russ; Nathaniel Novod; Jason Affourtit; Michael Egholm; Christine Verna; Pavao Rudan; Dejana Brajkovic; Željko Kucan; Ivan Gušic; Vladimir B Doronichev; Liubov V Golovanova; Carles Lalueza-Fox; Marco de la Rasilla; Javier Fortea; Antonio Rosas; Ralf W Schmitz; Philip L F Johnson; Evan E Eichler; Daniel Falush; Ewan Birney; James C Mullikin; Montgomery Slatkin; Rasmus Nielsen; Janet Kelso; Michael Lachmann; David Reich; Svante Pääbo
Journal:  Science       Date:  2010-05-07       Impact factor: 47.728

5.  Expression profiling reveals meiotic male germ cell mRNAs that are translationally up- and down-regulated.

Authors:  Naoko Iguchi; John W Tobias; Norman B Hecht
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-08       Impact factor: 11.205

6.  Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania.

Authors:  David Reich; Nick Patterson; Martin Kircher; Frederick Delfin; Madhusudan R Nandineni; Irina Pugach; Albert Min-Shan Ko; Ying-Chin Ko; Timothy A Jinam; Maude E Phipps; Naruya Saitou; Andreas Wollstein; Manfred Kayser; Svante Pääbo; Mark Stoneking
Journal:  Am J Hum Genet       Date:  2011-09-22       Impact factor: 11.025

Review 7.  Meiotic chromosome abnormalities in human spermatogenesis.

Authors:  Renée H Martin
Journal:  Reprod Toxicol       Date:  2006-05-22       Impact factor: 3.143

8.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

9.  Reintroduction of confiscated and displaced mammals risks outbreeding and introgression in natural populations, as evidenced by orang-utans of divergent subspecies.

Authors:  Graham L Banes; Biruté M F Galdikas; Linda Vigilant
Journal:  Sci Rep       Date:  2016-02-25       Impact factor: 4.379

10.  Genetic incompatibilities are widespread within species.

Authors:  Russell B Corbett-Detig; Jun Zhou; Andrew G Clark; Daniel L Hartl; Julien F Ayroles
Journal:  Nature       Date:  2013-11-06       Impact factor: 49.962

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1.  Impact and Evolutionary Determinants of Neanderthal Introgression on Transcriptional and Post-Transcriptional Regulation.

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2.  Directing differentiation of human induced pluripotent stem cells toward androgen-producing Leydig cells rather than adrenal cells.

Authors:  Lu Li; Yuchang Li; Chantal Sottas; Martine Culty; Jinjiang Fan; Yiman Hu; Garett Cheung; Héctor E Chemes; Vassilios Papadopoulos
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Review 3.  Evaluating genetic causes of azoospermia: What can we learn from a complex cellular structure and single-cell transcriptomics of the human testis?

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Review 4.  Evolutionary and Medical Consequences of Archaic Introgression into Modern Human Genomes.

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Journal:  Genes (Basel)       Date:  2018-07-18       Impact factor: 4.096

5.  Characterisation and localisation of the endocannabinoid system components in the adult human testis.

Authors:  John E Nielsen; Antoine D Rolland; Ewa Rajpert-De Meyts; Christian Janfelt; Anne Jørgensen; Sofia B Winge; David M Kristensen; Anders Juul; Frédéric Chalmel; Bernard Jégou; Niels E Skakkebaek
Journal:  Sci Rep       Date:  2019-09-19       Impact factor: 4.379

6.  Androglobin, a chimeric mammalian globin, is required for male fertility.

Authors:  Anna Keppner; Miguel Correia; Sara Santambrogio; Teng Wei Koay; Darko Maric; Carina Osterhof; Denise V Winter; Angèle Clerc; Michael Stumpe; Frédéric Chalmel; Sylvia Dewilde; Alex Odermatt; Dieter Kressler; Thomas Hankeln; Roland H Wenger; David Hoogewijs
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7.  Quantifying the contribution of Neanderthal introgression to the heritability of complex traits.

Authors:  Evonne McArthur; David C Rinker; John A Capra
Journal:  Nat Commun       Date:  2021-07-22       Impact factor: 14.919

8.  Dynamic Copy Number Evolution of X- and Y-Linked Ampliconic Genes in Human Populations.

Authors:  Elise A Lucotte; Laurits Skov; Jacob Malte Jensen; Moisès Coll Macià; Kasper Munch; Mikkel H Schierup
Journal:  Genetics       Date:  2018-05-16       Impact factor: 4.562

9.  Combined RNA/tissue profiling identifies novel Cancer/testis genes.

Authors:  Soazik P Jamin; Feria Hikmet; Romain Mathieu; Bernard Jégou; Cecilia Lindskog; Frédéric Chalmel; Michael Primig
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  9 in total

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