Literature DB >> 28441918

Molecular dynamics simulations indicate that deoxyhemoglobin, oxyhemoglobin, carboxyhemoglobin, and glycated hemoglobin under compression and shear exhibit an anisotropic mechanical behavior.

Sumith Yesudasan1, Xianqiao Wang2, Rodney D Averett1.   

Abstract

We developed a new mechanical model for determining the compression and shear mechanical behavior of four different hemoglobin structures. Previous studies on hemoglobin structures have focused primarily on overall mechanical behavior; however, this study investigates the mechanical behavior of hemoglobin, a major constituent of red blood cells, using steered molecular dynamics (SMD) simulations to obtain anisotropic mechanical behavior under compression and shear loading conditions. Four different configurations of hemoglobin molecules were considered: deoxyhemoglobin (deoxyHb), oxyhemoglobin (HbO2), carboxyhemoglobin (HbCO), and glycated hemoglobin (HbA1C). The SMD simulations were performed on the hemoglobin variants to estimate their unidirectional stiffness and shear stiffness. Although hemoglobin is structurally denoted as a globular protein due to its spherical shape and secondary structure, our simulation results show a significant variation in the mechanical strength in different directions (anisotropy) and also a strength variation among the four different hemoglobin configurations studied. The glycated hemoglobin molecule possesses an overall higher compressive mechanical stiffness and shear stiffness when compared to deoxyhemoglobin, oxyhemoglobin, and carboxyhemoglobin molecules. Further results from the models indicate that the hemoglobin structures studied possess a soft outer shell and a stiff core based on stiffness.

Entities:  

Keywords:  biophysics; compression; hemoglobin; molecular dynamics; shear

Mesh:

Substances:

Year:  2017        PMID: 28441918      PMCID: PMC6863347          DOI: 10.1080/07391102.2017.1323674

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  45 in total

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5.  Allosteric changes in protein structure computed by a simple mechanical model: hemoglobin T<-->R2 transition.

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Authors:  Mehmet Uyuklu; Herbert J Meiselman; Oguz K Baskurt
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8.  Erythrocyte aggregation and erythrocyte deformability modify the permeability of erythrocyte enriched fibrin network.

Authors:  J M van Gelder; C H Nair; D P Dhall
Journal:  Thromb Res       Date:  1996-04-01       Impact factor: 3.944

9.  Fluidity of intact erythrocyte membranes. Correction for fluorescence energy transfer from diphenylhexatriene to hemoglobin.

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Review 10.  Fibrin clot structure and function: a role in the pathophysiology of arterial and venous thromboembolic diseases.

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  2 in total

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2.  Molecular insights into the irreversible mechanical behavior of sickle hemoglobin.

Authors:  Sumith Yesudasan; Simone A Douglas; Manu O Platt; Xianqiao Wang; Rodney D Averett
Journal:  J Biomol Struct Dyn       Date:  2018-05-04
  2 in total

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