Literature DB >> 28437135

D3GB: An Interactive Genome Browser for R, Python, and WordPress.

David Barrios1, Carlos Prieto1,2.   

Abstract

Genome browsers are useful not only for showing final results but also for improving analysis protocols, testing data quality, and generating result drafts. Its integration in analysis pipelines allows the optimization of parameters, which leads to better results. New developments that facilitate the creation and utilization of genome browsers could contribute to improving analysis results and supporting the quick visualization of genomic data. D3 Genome Browser is an interactive genome browser that can be easily integrated in analysis protocols and shared on the Web. It is distributed as an R package, a Python module, and a WordPress plugin to facilitate its integration in pipelines and the utilization of platform capabilities. It is compatible with popular data formats such as GenBank, GFF, BED, FASTA, and VCF, and enables the exploration of genomic data with a Web browser.

Keywords:  Python; R; WordPress; genome browser; next generation sequencing; visualization

Mesh:

Year:  2017        PMID: 28437135     DOI: 10.1089/cmb.2016.0213

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  2 in total

1.  SeMPI 2.0-A Web Server for PKS and NRPS Predictions Combined with Metabolite Screening in Natural Product Databases.

Authors:  Paul F Zierep; Adriana T Ceci; Ilia Dobrusin; Sinclair C Rockwell-Kollmann; Stefan Günther
Journal:  Metabolites       Date:  2020-12-29

2.  GIVE: portable genome browsers for personal websites.

Authors:  Xiaoyi Cao; Zhangming Yan; Qiuyang Wu; Alvin Zheng; Sheng Zhong
Journal:  Genome Biol       Date:  2018-07-18       Impact factor: 13.583

  2 in total

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