| Literature DB >> 28435726 |
Nina Salamzadeh1, Zeynep Demircioglu1, Ufuk Korkmaz1, Orhan Büyükgüngör1.
Abstract
The asymmetric unit of the title compound, C6H10N22+·2C4HO4-, comprises two hydrogen squarate (Hsq-; systematic name: 2-hy-droxy-3,4-dioxo-cyclo-butano-late) anions and a 2-(aza-niumylmeth-yl)pyridinium dication. The squaric acid mol-ecules each donate an H atom to the N atoms of the pyridine ring and the amino-methyl units of a 2-(amino-meth-yl)pyridine mol-ecule, forming the 1:2 salt. The Hsq- anions are linked by strong O-H⋯O hydrogen bonds and an N-H⋯O hydrogen bond links the 2-(aza-niumylmeth-yl)pyridinium cation to one of the squaric acid anions. The crystal structure features additional N-H⋯O and O-H⋯O hydrogen bonds, π-π stacking and unusual weak C-O⋯π(ring) inter-actions.Entities:
Keywords: 2-(azaniumylmethyl)pyridinium; crystal structure; hydrogen bonding; squaric acid
Year: 2017 PMID: 28435726 PMCID: PMC5382627 DOI: 10.1107/S2056989017004376
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of the asymmetric unit of (I), showing the atom-numbering scheme and 30% probability displacement ellipsoids. Dashed lines indicate hydrogen bonds.
Hydrogen-bond geometry (Å, °)
Cg2 and Cg3 are the centroids of the C7–C10 and C11–C14 rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.93 (2) | 1.74 (2) | 2.6598 (15) | 166.7 (19) |
| N2—H2 | 0.89 | 2.05 | 2.8565 (16) | 150 |
| N2—H2 | 0.89 | 2.56 | 3.1613 (17) | 126 |
| N2—H2 | 0.89 | 2.02 | 2.8765 (16) | 161 |
| N2—H2 | 0.89 | 1.90 | 2.7580 (15) | 162 |
| O4—H4 | 0.99 (2) | 1.51 (2) | 2.4993 (14) | 175 (2) |
| O5—H5 | 1.00 (2) | 1.46 (2) | 2.4583 (14) | 175 (2) |
| C7—O1⋯ | 1.25 (1) | 3.38 (1) | 3.3226 (14) | 77 (1) |
| C7—O1⋯ | 1.25 (1) | 3.39 (1) | 3.3297 (14) | 76 (1) |
| C13—O7⋯ | 1.21 (1) | 3.52 (1) | 3.4188 (15) | 75 (1) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 2A view of the N—H⋯O and O—H⋯O interactions in the crystal of the title compound (hydrogen bonds are shown as dashed lines; see Table 1 ▸ for numerical details).
Figure 3A packing diagram showing the C—O⋯π and π–π stacking interactions. [Symmetry codes: (ii) −x + 1, −y + 1, −z + 1; (iv) −x + , y + , −z + ; (v) −x + , y − , −z + .] H atoms not involved in the interactions have been omitted for clarity.
Experimental details
| Crystal data | |
| Chemical formula | C6H10N2 2+·2C4HO4 − |
|
| 336.26 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 7.4653 (7), 15.4548 (14), 12.2095 (12) |
| β (°) | 90.073 (4) |
|
| 1408.7 (2) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.13 |
| Crystal size (mm) | 0.17 × 0.13 × 0.11 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.672, 0.746 |
| No. of measured, independent and observed [ | 70681, 3496, 3090 |
|
| 0.042 |
| (sin θ/λ)max (Å−1) | 0.668 |
| Refinement | |
|
| 0.042, 0.118, 1.11 |
| No. of reflections | 3496 |
| No. of parameters | 227 |
| H-atom treatment | H-atom parameters not refined |
| Δρmax, Δρmin (e Å−3) | 0.26, −0.28 |
Computer programs: APEX2 and SAINT (Bruker, 2013 ▸), SHELXT2014 (Sheldrick, 2008 ▸), SHELXL2016 (Sheldrick, 2015 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| C6H10N22+·2C4HO4− | |
| Monoclinic, | Mo |
| Cell parameters from 9896 reflections | |
| θ = 3.0–28.3° | |
| µ = 0.13 mm−1 | |
| β = 90.073 (4)° | |
| Block, bronze | |
| 0.17 × 0.13 × 0.11 mm |
| Bruker APEXII CCD diffractometer | 3090 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2013) | θmax = 28.3°, θmin = 3.0° |
| 70681 measured reflections | |
| 3496 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H-atom parameters not refined | |
| (Δ/σ)max < 0.001 | |
| 3496 reflections | Δρmax = 0.26 e Å−3 |
| 227 parameters | Δρmin = −0.28 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.3472 (2) | 0.59963 (10) | 0.10814 (12) | 0.0377 (3) | |
| H1 | 0.376471 | 0.541181 | 0.111071 | 0.045* | |
| C2 | 0.2856 (2) | 0.63543 (13) | 0.01196 (13) | 0.0479 (4) | |
| H2 | 0.270245 | 0.601292 | −0.050069 | 0.058* | |
| C3 | 0.2473 (2) | 0.72223 (14) | 0.00899 (14) | 0.0507 (4) | |
| H3 | 0.210063 | 0.747750 | −0.056155 | 0.061* | |
| C4 | 0.2640 (2) | 0.77205 (11) | 0.10321 (14) | 0.0442 (4) | |
| H4 | 0.236500 | 0.830733 | 0.101700 | 0.053* | |
| C5 | 0.32152 (18) | 0.73381 (8) | 0.19877 (12) | 0.0305 (3) | |
| C6 | 0.3378 (2) | 0.78078 (10) | 0.30627 (14) | 0.0419 (4) | |
| H6A | 0.424710 | 0.751293 | 0.352098 | 0.050* | |
| H6B | 0.381247 | 0.839005 | 0.293104 | 0.050* | |
| C7 | 0.61186 (16) | 0.53092 (8) | 0.38741 (10) | 0.0245 (2) | |
| C8 | 0.59463 (17) | 0.44771 (8) | 0.32689 (10) | 0.0273 (3) | |
| C9 | 0.71303 (18) | 0.40741 (8) | 0.41129 (10) | 0.0278 (3) | |
| C10 | 0.72538 (16) | 0.48889 (8) | 0.46610 (10) | 0.0247 (2) | |
| C11 | 0.64141 (18) | 0.16148 (8) | 0.29601 (10) | 0.0289 (3) | |
| C12 | 0.54027 (17) | 0.10155 (8) | 0.23404 (10) | 0.0271 (3) | |
| C13 | 0.57553 (18) | 0.03307 (9) | 0.31604 (10) | 0.0293 (3) | |
| C14 | 0.67917 (17) | 0.09946 (8) | 0.38172 (10) | 0.0272 (3) | |
| N1 | 0.36494 (15) | 0.64919 (7) | 0.19743 (9) | 0.0288 (2) | |
| N2 | 0.16375 (17) | 0.78523 (8) | 0.36470 (10) | 0.0346 (3) | |
| H2A | 0.177821 | 0.813962 | 0.427290 | 0.052* | |
| H2C | 0.125260 | 0.731888 | 0.378838 | 0.052* | |
| H2B | 0.083844 | 0.812501 | 0.322984 | 0.052* | |
| O1 | 0.54865 (14) | 0.60498 (6) | 0.37564 (8) | 0.0328 (2) | |
| O2 | 0.51318 (15) | 0.42458 (7) | 0.24462 (8) | 0.0387 (3) | |
| O3 | 0.77376 (16) | 0.33276 (6) | 0.42957 (9) | 0.0409 (3) | |
| O4 | 0.80146 (14) | 0.51691 (6) | 0.55513 (8) | 0.0331 (2) | |
| O5 | 0.68219 (19) | 0.24159 (7) | 0.27431 (9) | 0.0457 (3) | |
| O6 | 0.45452 (15) | 0.10825 (7) | 0.14494 (8) | 0.0380 (3) | |
| O7 | 0.54053 (18) | −0.04333 (7) | 0.32469 (10) | 0.0514 (3) | |
| O8 | 0.76167 (16) | 0.09899 (7) | 0.46951 (8) | 0.0400 (3) | |
| H1A | 0.419 (3) | 0.6260 (13) | 0.2598 (17) | 0.048* | |
| H5A | 0.725 (3) | 0.2770 (14) | 0.3380 (18) | 0.060* | |
| H4A | 0.868 (3) | 0.4687 (15) | 0.5894 (17) | 0.060* |
| C1 | 0.0412 (7) | 0.0344 (7) | 0.0375 (8) | 0.0016 (6) | 0.0005 (6) | −0.0072 (6) |
| C2 | 0.0440 (8) | 0.0679 (11) | 0.0320 (7) | −0.0028 (8) | −0.0042 (6) | −0.0111 (7) |
| C3 | 0.0442 (9) | 0.0732 (12) | 0.0346 (8) | 0.0039 (8) | −0.0084 (6) | 0.0176 (8) |
| C4 | 0.0458 (8) | 0.0362 (8) | 0.0505 (9) | 0.0057 (6) | −0.0058 (7) | 0.0159 (7) |
| C5 | 0.0293 (6) | 0.0253 (6) | 0.0370 (7) | −0.0015 (5) | −0.0047 (5) | 0.0011 (5) |
| C6 | 0.0383 (7) | 0.0333 (7) | 0.0540 (9) | −0.0031 (6) | −0.0126 (7) | −0.0137 (6) |
| C7 | 0.0285 (6) | 0.0245 (6) | 0.0207 (5) | −0.0021 (4) | −0.0029 (4) | 0.0028 (4) |
| C8 | 0.0327 (6) | 0.0254 (6) | 0.0237 (6) | −0.0010 (5) | −0.0045 (5) | 0.0012 (5) |
| C9 | 0.0344 (6) | 0.0230 (6) | 0.0259 (6) | −0.0008 (5) | −0.0073 (5) | −0.0009 (4) |
| C10 | 0.0297 (6) | 0.0222 (5) | 0.0223 (5) | −0.0007 (4) | −0.0045 (4) | 0.0009 (4) |
| C11 | 0.0364 (6) | 0.0242 (6) | 0.0261 (6) | 0.0020 (5) | −0.0054 (5) | −0.0052 (5) |
| C12 | 0.0307 (6) | 0.0257 (6) | 0.0248 (6) | 0.0040 (5) | −0.0059 (5) | −0.0052 (5) |
| C13 | 0.0322 (6) | 0.0280 (6) | 0.0276 (6) | −0.0013 (5) | −0.0061 (5) | −0.0020 (5) |
| C14 | 0.0297 (6) | 0.0287 (6) | 0.0234 (6) | 0.0000 (5) | −0.0039 (5) | −0.0035 (5) |
| N1 | 0.0310 (5) | 0.0265 (5) | 0.0287 (5) | 0.0017 (4) | −0.0043 (4) | 0.0019 (4) |
| N2 | 0.0473 (7) | 0.0276 (6) | 0.0288 (6) | 0.0021 (5) | −0.0120 (5) | −0.0032 (4) |
| O1 | 0.0431 (5) | 0.0240 (4) | 0.0312 (5) | 0.0049 (4) | −0.0081 (4) | 0.0028 (4) |
| O2 | 0.0505 (6) | 0.0340 (5) | 0.0315 (5) | −0.0006 (4) | −0.0189 (4) | −0.0030 (4) |
| O3 | 0.0594 (7) | 0.0227 (5) | 0.0405 (6) | 0.0071 (4) | −0.0227 (5) | −0.0051 (4) |
| O4 | 0.0452 (5) | 0.0257 (5) | 0.0282 (5) | 0.0014 (4) | −0.0150 (4) | −0.0028 (4) |
| O5 | 0.0797 (9) | 0.0227 (5) | 0.0346 (5) | −0.0061 (5) | −0.0174 (5) | −0.0021 (4) |
| O6 | 0.0520 (6) | 0.0309 (5) | 0.0310 (5) | 0.0043 (4) | −0.0204 (4) | −0.0050 (4) |
| O7 | 0.0700 (8) | 0.0309 (6) | 0.0532 (7) | −0.0154 (5) | −0.0214 (6) | 0.0067 (5) |
| O8 | 0.0525 (6) | 0.0386 (6) | 0.0290 (5) | −0.0023 (5) | −0.0171 (4) | −0.0034 (4) |
| C1—N1 | 1.3388 (18) | C9—O3 | 1.2593 (16) |
| C1—C2 | 1.377 (2) | C9—C10 | 1.4291 (17) |
| C1—H1 | 0.9300 | C10—O4 | 1.3000 (15) |
| C2—C3 | 1.372 (3) | C11—O5 | 1.3023 (17) |
| C2—H2 | 0.9300 | C11—C12 | 1.4139 (17) |
| C3—C4 | 1.390 (3) | C11—C14 | 1.4465 (18) |
| C3—H3 | 0.9300 | C12—O6 | 1.2658 (15) |
| C4—C5 | 1.376 (2) | C12—C13 | 1.4802 (18) |
| C4—H4 | 0.9300 | C13—O7 | 1.2141 (17) |
| C5—N1 | 1.3475 (17) | C13—C14 | 1.5141 (17) |
| C5—C6 | 1.505 (2) | C14—O8 | 1.2356 (16) |
| C6—N2 | 1.485 (2) | N1—H1A | 0.93 (2) |
| C6—H6A | 0.9700 | N2—H2A | 0.8900 |
| C6—H6B | 0.9700 | N2—H2C | 0.8900 |
| C7—O1 | 1.2462 (15) | N2—H2B | 0.8900 |
| C7—C10 | 1.4357 (16) | O3—H5A | 1.46 (2) |
| C7—C8 | 1.4886 (17) | O4—H4A | 0.99 (2) |
| C8—O2 | 1.2268 (15) | O5—H5A | 1.00 (2) |
| C8—C9 | 1.4929 (17) | ||
| N1—C1—C2 | 119.82 (15) | C10—C9—C8 | 89.62 (10) |
| N1—C1—H1 | 120.1 | O4—C10—C9 | 135.48 (12) |
| C2—C1—H1 | 120.1 | O4—C10—C7 | 131.74 (12) |
| C3—C2—C1 | 119.01 (15) | C9—C10—C7 | 92.73 (10) |
| C3—C2—H2 | 120.5 | O5—C11—C12 | 129.70 (12) |
| C1—C2—H2 | 120.5 | O5—C11—C14 | 137.03 (12) |
| C2—C3—C4 | 120.09 (15) | C12—C11—C14 | 93.24 (11) |
| C2—C3—H3 | 120.0 | O6—C12—C11 | 132.49 (13) |
| C4—C3—H3 | 120.0 | O6—C12—C13 | 136.82 (12) |
| C5—C4—C3 | 119.43 (15) | C11—C12—C13 | 90.68 (10) |
| C5—C4—H4 | 120.3 | O7—C13—C12 | 135.73 (12) |
| C3—C4—H4 | 120.3 | O7—C13—C14 | 136.29 (13) |
| N1—C5—C4 | 118.78 (14) | C12—C13—C14 | 87.94 (10) |
| N1—C5—C6 | 117.37 (12) | O8—C14—C11 | 136.71 (12) |
| C4—C5—C6 | 123.85 (14) | O8—C14—C13 | 135.18 (12) |
| N2—C6—C5 | 111.82 (11) | C11—C14—C13 | 88.10 (10) |
| N2—C6—H6A | 109.3 | C1—N1—C5 | 122.79 (12) |
| C5—C6—H6A | 109.3 | C1—N1—H1A | 119.1 (12) |
| N2—C6—H6B | 109.3 | C5—N1—H1A | 117.8 (12) |
| C5—C6—H6B | 109.3 | C6—N2—H2A | 109.5 |
| H6A—C6—H6B | 107.9 | C6—N2—H2C | 109.5 |
| O1—C7—C10 | 135.70 (12) | H2A—N2—H2C | 109.5 |
| O1—C7—C8 | 134.73 (11) | C6—N2—H2B | 109.5 |
| C10—C7—C8 | 89.54 (10) | H2A—N2—H2B | 109.5 |
| O2—C8—C7 | 134.48 (12) | H2C—N2—H2B | 109.5 |
| O2—C8—C9 | 137.39 (12) | C9—O3—H5A | 108.5 (9) |
| C7—C8—C9 | 88.12 (9) | C10—O4—H4A | 108.8 (12) |
| O3—C9—C10 | 134.53 (12) | C11—O5—H5A | 115.9 (12) |
| O3—C9—C8 | 135.83 (12) | ||
| N1—C1—C2—C3 | 1.5 (2) | O1—C7—C10—C9 | 177.87 (16) |
| C1—C2—C3—C4 | −2.5 (3) | C8—C7—C10—C9 | −0.11 (10) |
| C2—C3—C4—C5 | 0.9 (3) | O5—C11—C12—O6 | −4.0 (3) |
| C3—C4—C5—N1 | 1.8 (2) | C14—C11—C12—O6 | 177.80 (15) |
| C3—C4—C5—C6 | −177.64 (15) | O5—C11—C12—C13 | 176.91 (15) |
| N1—C5—C6—N2 | −96.31 (15) | C14—C11—C12—C13 | −1.33 (11) |
| C4—C5—C6—N2 | 83.15 (19) | O6—C12—C13—O7 | 4.0 (3) |
| O1—C7—C8—O2 | 0.6 (3) | C11—C12—C13—O7 | −176.90 (19) |
| C10—C7—C8—O2 | 178.65 (16) | O6—C12—C13—C14 | −177.79 (17) |
| O1—C7—C8—C9 | −177.91 (15) | C11—C12—C13—C14 | 1.27 (10) |
| C10—C7—C8—C9 | 0.10 (10) | O5—C11—C14—O8 | 2.2 (3) |
| O2—C8—C9—O3 | −0.3 (3) | C12—C11—C14—O8 | −179.74 (17) |
| C7—C8—C9—O3 | 178.15 (17) | O5—C11—C14—C13 | −176.71 (18) |
| O2—C8—C9—C10 | −178.57 (17) | C12—C11—C14—C13 | 1.30 (10) |
| C7—C8—C9—C10 | −0.11 (10) | O7—C13—C14—O8 | −2.1 (3) |
| O3—C9—C10—O4 | −0.8 (3) | C12—C13—C14—O8 | 179.77 (16) |
| C8—C9—C10—O4 | 177.53 (16) | O7—C13—C14—C11 | 176.91 (19) |
| O3—C9—C10—C7 | −178.19 (17) | C12—C13—C14—C11 | −1.24 (10) |
| C8—C9—C10—C7 | 0.11 (10) | C2—C1—N1—C5 | 1.3 (2) |
| O1—C7—C10—O4 | 0.3 (3) | C4—C5—N1—C1 | −3.0 (2) |
| C8—C7—C10—O4 | −177.69 (15) | C6—C5—N1—C1 | 176.53 (13) |
| H··· | ||||
| N1—H1 | 0.93 (2) | 1.74 (2) | 2.6598 (15) | 166.7 (19) |
| N2—H2 | 0.89 | 2.05 | 2.8565 (16) | 150 |
| N2—H2 | 0.89 | 2.56 | 3.1613 (17) | 126 |
| N2—H2 | 0.89 | 2.02 | 2.8765 (16) | 161 |
| N2—H2 | 0.89 | 1.90 | 2.7580 (15) | 162 |
| O4—H4 | 0.99 (2) | 1.51 (2) | 2.4993 (14) | 175 (2) |
| O5—H5 | 1.00 (2) | 1.46 (2) | 2.4583 (14) | 175 (2) |
| C7—O1··· | 1.25 (1) | 3.38 (1) | 3.3226 (14) | 77 (1) |
| C7—O1··· | 1.25 (1) | 3.39 (1) | 3.3297 (14) | 76 (1) |
| C13—O7··· | 1.21 (1) | 3.52 (1) | 3.4188 (15) | 75 (1) |