| Literature DB >> 28435725 |
James L Wardell1,2, Mukesh M Jotani3, Edward R T Tiekink4.
Abstract
In the anion of the title salt hydrate, H5N2+·C7H5N2O4-·2H2O, the carboxyl-ate and nitro groups lie out of the plane of the benzene ring to which they are bound [dihedral angles = 18.80 (10) and 8.04 (9)°, respectively], and as these groups are conrotatory, the dihedral angle between them is 26.73 (15)°. An intra-molecular amino-N-H⋯O(carboxyl-ate) hydrogen bond is noted. The main feature of the crystal packing is the formation of a supra-molecular chain along the b axis, with a zigzag topology, sustained by charge-assisted water-O-H⋯O(carboxyl-ate) hydrogen bonds and comprising alternating twelve-membered {⋯OCO⋯HOH}2 and eight-membered {⋯O⋯HOH}2 synthons. Each ammonium-N-H atom forms a charge-assisted hydrogen bond to a water mol-ecule and, in addition, one of these forms a hydrogen bond with a nitro-O atom. The amine-N-H atoms form hydrogen bonds to carboxyl-ate-O and water-O atoms, and the amine N atom accepts a hydrogen bond from an amino-H atom. The hydrogen bonds lead to a three-dimensional architecture. An analysis of the Hirshfeld surface highlights the major contribution of O⋯H/H⋯O hydrogen bonding to the overall surface, i.e. 46.8%, compared with H⋯H contacts (32.4%).Entities:
Keywords: Hirshfeld surface analysis; carboxylate; crystal structure; hydrogen bonding; salt
Year: 2017 PMID: 28435725 PMCID: PMC5382626 DOI: 10.1107/S2056989017004352
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structures of the asymmetric unit of (I), showing displacement ellipsoids at the 70% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.88 (1) | 2.07 (1) | 2.7098 (15) | 129 (1) |
| N1—H2 | 0.88 (1) | 2.29 (1) | 3.1403 (16) | 165 (1) |
| N3—H3 | 0.86 (1) | 1.97 (1) | 2.8136 (15) | 167 (1) |
| N3—H4 | 0.87 (2) | 2.25 (2) | 2.8969 (16) | 132 (1) |
| N3—H4 | 0.87 (2) | 2.34 (1) | 3.0739 (15) | 143 (1) |
| N3—H5 | 0.87 (1) | 1.93 (2) | 2.7862 (15) | 167 (1) |
| N4—H6 | 0.87 (1) | 2.20 (1) | 3.0623 (15) | 178 (1) |
| N4—H7 | 0.87 (1) | 2.20 (1) | 3.0106 (15) | 155 (1) |
| O1 | 0.86 (2) | 1.97 (2) | 2.8071 (14) | 166 (2) |
| O1 | 0.83 (2) | 1.90 (2) | 2.7208 (13) | 171 (2) |
| O2 | 0.85 (2) | 1.92 (2) | 2.7479 (13) | 165 (2) |
| O2 | 0.85 (2) | 1.91 (2) | 2.7627 (14) | 175 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Figure 2The molecular packing in (I): (a) immediate environment about the [H2NNH3] cation, (b) supramolecular chain comprising anions and water molecules only, orientated along the b axis and sustained by water-O—H⋯O(carboxylate) hydrogen bonding, (c) decoration of the chain of (b) with cations and additional water molecules to highlight the formation of various supramolecular synthons (see text) and (d) a view of the unit-cell contents in projection down the b axis. The O—H⋯O, N—H⋯O, N—H⋯N and intramolecular N—H⋯O hydrogen bonds are shown as orange, blue, brown and pink dashed lines, respectively. In (b) and (c), all but the CO2 groups of the two central benzoate residues have been removed for clarity.
Figure 3Two views of the Hirshfeld surface for (I) mapped over the electrostatic potential over the range −0.214 to +0.341 au; the red and blue regions represent negative and positive electrostatic potentials, respectively.
Figure 4Two views of the Hirshfeld surface for (I) mapped over d norm over the range −0.352 to 1.156 au.
Summary of short interatomic contacts (Å) in (I)
| Contact | Distance | Symmetry operation |
|---|---|---|
| H5 | 2.38 (2) | - |
| H7 | 2.34 (2) | - |
| H4 | 2.626 (15) |
|
| H5⋯O4 | 2.61 | 1 − |
| H2 | 2.652 (15) |
|
| N1⋯O4 | 3.0205 (15) |
|
| C7⋯O3 | 3.1231 (17) | - |
| C2⋯C4 | 3.2936 (19) | - |
| C3⋯C3 | 3.3235 (19) | - |
Figure 5View of Hirshfeld surface for (I) mapped (a) over d norm about a reference molecule showing hydrogen bonds as white dashed lines and (b) mapped with the shape-index property about a reference ion-pair. The short interatomic C⋯C, N⋯O and C⋯O contacts are indicated with red, blue and white dotted lines, respectively
Figure 6(a)The full two-dimensional fingerprint plot for (I) and fingerprint plots delineated into (b) O⋯H/H⋯O, (c) H⋯H, (d) C⋯C, (e) C⋯H/H⋯C, (f) C⋯O/O⋯C and (g) N⋯O/O⋯N contacts.
Percentage contribution to interatomic contacts from the Hirshfeld surface for (I)
| Contact | Percentage contribution |
|---|---|
| O⋯H/H⋯O | 46.8 |
| H⋯H | 32.4 |
| C⋯H/H⋯C | 5.9 |
| C⋯C | 5.7 |
| C⋯O/O⋯C | 3.3 |
| O⋯O | 1.6 |
| N⋯O/O⋯N | 1.3 |
| C⋯N / N⋯C | 1.2 |
| N⋯N | 1.0 |
| N⋯H/H⋯N | 0.8 |
Figure 7A view of Hirshfeld surfaces mapped over curvedness showing the flat region about the phenyl ring engaged in face-to-face π–π interactions.
Geometric data (°) for ammonium salts of 2-amino-4-nitrobenzoate. Extreme values for each parameter are bolded
| cation |
| C6/CO2 | C6/NO2 | CO2/NO2 | Ref. |
|---|---|---|---|---|---|
| [NH4]+
| 1 |
| 2.9 (3) | 24.1 (4) | Smith (2014 |
| [Me2NH2]+ | 1 | 11.45 (13) | 3.71 (15) | 7.9 (2) | Wardell |
| [ | 2 | 12.73 (6) | 4.30 (10) | 17.02 (8) | Wardell |
| 8.1 (4) |
| 19.0 (5) | |||
| [Cy2NH2]+ | 2 | 9.87 (10) | 7.58 (15) | 3.42 (19) | Smith |
| 9.52 (9) | 7.86 (11) | 3.92 (2) | |||
| [O(CH2CH2)2NH2]+ | 1 | 17.92 (9) | 1.28 (11) | 19.19 (13) | Smith & Lynch (2016 |
| [(H2N)2C=NH2]+
| 1 | 5.88 (11) | 5.64 (12) | Smith | |
| [H3NCH2CH2NH3]2+
| 1 |
|
|
| Smith |
| [H2NNH3]2+
| 1 | 18.80 (10) | 8.04 (9) |
| this work |
Notes: (a) crystallized as a monohydrate; (b) crystallized as a dihydrate.
Experimental details
| Crystal data | |
| Chemical formula | H5N2 +·C7H5N2O4 −·2H2O |
|
| 250.22 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 120 |
|
| 6.9695 (2), 8.0960 (3), 10.5316 (3) |
| α, β, γ (°) | 76.468 (2), 73.251 (2), 75.390 (2) |
|
| 542.23 (3) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.13 |
| Crystal size (mm) | 0.41 × 0.22 × 0.13 |
| Data collection | |
| Diffractometer | Bruker–Nonius Roper CCD camera on κ-goniostat |
| Absorption correction | Multi-scan ( |
|
| 0.644, 0.746 |
| No. of measured, independent and observed [ | 11539, 2497, 2147 |
|
| 0.034 |
| Refinement | |
|
| 0.039, 0.110, 1.05 |
| No. of reflections | 2497 |
| No. of parameters | 187 |
| No. of restraints | 13 |
| Δρmax, Δρmin (e Å−3) | 0.29, −0.30 |
Computer programs: DENZO (Otwinowski & Minor, 1997 ▸), COLLECT (Hooft, 1998 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| H5N2+·C7H5N2O4−·2H2O | |
| Triclinic, | |
| Mo | |
| Cell parameters from 7476 reflections | |
| θ = 2.9–27.5° | |
| α = 76.468 (2)° | µ = 0.13 mm−1 |
| β = 73.251 (2)° | |
| γ = 75.390 (2)° | Block, red |
| 0.41 × 0.22 × 0.13 mm |
| Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer | 2497 independent reflections |
| Radiation source: Bruker–Nonius FR591 rotating anode | 2147 reflections with |
| Graphite monochromator | |
| Detector resolution: 9.091 pixels mm-1 | θmax = 27.6°, θmin = 3.1° |
| φ & ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | |
| 11539 measured reflections |
| Refinement on | 13 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.29 e Å−3 | |
| 2497 reflections | Δρmin = −0.30 e Å−3 |
| 187 parameters |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.40595 (14) | 0.36669 (11) | 0.25616 (9) | 0.0168 (2) | |
| O2 | 0.46220 (13) | 0.18017 (11) | 0.11781 (9) | 0.0164 (2) | |
| O3 | 0.04781 (14) | −0.28112 (12) | 0.77375 (9) | 0.0224 (2) | |
| O4 | 0.24000 (15) | −0.47250 (11) | 0.65475 (9) | 0.0195 (2) | |
| N1 | 0.15996 (17) | 0.28747 (14) | 0.50370 (11) | 0.0163 (2) | |
| H1N | 0.218 (2) | 0.3697 (17) | 0.4483 (14) | 0.020* | |
| H2N | 0.107 (2) | 0.301 (2) | 0.5877 (10) | 0.020* | |
| N2 | 0.17056 (16) | −0.32135 (13) | 0.67034 (10) | 0.0150 (2) | |
| C1 | 0.34738 (18) | 0.08075 (15) | 0.35268 (12) | 0.0128 (3) | |
| C2 | 0.23062 (17) | 0.12171 (15) | 0.47960 (12) | 0.0123 (3) | |
| C3 | 0.17447 (18) | −0.01538 (16) | 0.58371 (12) | 0.0133 (3) | |
| H3 | 0.0949 | 0.0079 | 0.6698 | 0.016* | |
| C4 | 0.23572 (18) | −0.18300 (15) | 0.55975 (12) | 0.0132 (3) | |
| C5 | 0.35262 (19) | −0.22781 (16) | 0.43707 (13) | 0.0152 (3) | |
| H5 | 0.3943 | −0.3450 | 0.4241 | 0.018* | |
| C6 | 0.40531 (19) | −0.09256 (16) | 0.33461 (12) | 0.0148 (3) | |
| H6 | 0.4836 | −0.1183 | 0.2489 | 0.018* | |
| C7 | 0.40929 (18) | 0.21917 (15) | 0.23517 (12) | 0.0130 (3) | |
| N3 | −0.00982 (17) | 0.32666 (14) | 0.90634 (11) | 0.0161 (2) | |
| H3N | 0.045 (2) | 0.2268 (14) | 0.9450 (14) | 0.019* | |
| H4N | 0.086 (2) | 0.3844 (19) | 0.8652 (14) | 0.019* | |
| H5N | −0.102 (2) | 0.3825 (19) | 0.9655 (13) | 0.019* | |
| N4 | −0.09239 (17) | 0.30241 (15) | 0.80197 (11) | 0.0180 (3) | |
| H6N | −0.179 (2) | 0.3973 (15) | 0.7857 (16) | 0.022* | |
| H7N | −0.159 (2) | 0.2192 (17) | 0.8375 (15) | 0.022* | |
| O1W | 0.21973 (14) | 0.02486 (12) | 0.02803 (10) | 0.0184 (2) | |
| H1W | 0.279 (3) | 0.070 (2) | 0.0681 (16) | 0.028* | |
| H2W | 0.312 (2) | −0.033 (2) | −0.0235 (15) | 0.028* | |
| O2W | 0.31998 (14) | 0.45790 (12) | −0.06089 (9) | 0.0170 (2) | |
| H3W | 0.381 (2) | 0.382 (2) | −0.0080 (15) | 0.025* | |
| H4W | 0.409 (2) | 0.506 (2) | −0.1221 (15) | 0.025* |
| O1 | 0.0211 (5) | 0.0127 (5) | 0.0162 (4) | −0.0063 (3) | −0.0025 (3) | −0.0008 (3) |
| O2 | 0.0197 (5) | 0.0145 (5) | 0.0126 (4) | −0.0027 (3) | −0.0020 (3) | −0.0008 (3) |
| O3 | 0.0216 (5) | 0.0207 (5) | 0.0165 (5) | −0.0019 (4) | 0.0023 (4) | 0.0019 (4) |
| O4 | 0.0268 (5) | 0.0115 (5) | 0.0204 (5) | −0.0057 (4) | −0.0067 (4) | 0.0005 (3) |
| N1 | 0.0209 (6) | 0.0119 (5) | 0.0145 (5) | −0.0046 (4) | −0.0005 (4) | −0.0026 (4) |
| N2 | 0.0151 (5) | 0.0145 (5) | 0.0158 (5) | −0.0045 (4) | −0.0059 (4) | 0.0009 (4) |
| C1 | 0.0127 (6) | 0.0121 (6) | 0.0139 (6) | −0.0033 (4) | −0.0043 (4) | −0.0004 (4) |
| C2 | 0.0113 (6) | 0.0120 (6) | 0.0147 (6) | −0.0027 (4) | −0.0058 (4) | −0.0009 (4) |
| C3 | 0.0122 (6) | 0.0148 (6) | 0.0126 (6) | −0.0031 (4) | −0.0033 (4) | −0.0012 (4) |
| C4 | 0.0129 (6) | 0.0127 (6) | 0.0140 (6) | −0.0046 (4) | −0.0052 (4) | 0.0021 (5) |
| C5 | 0.0162 (6) | 0.0102 (6) | 0.0187 (6) | −0.0014 (4) | −0.0055 (5) | −0.0014 (5) |
| C6 | 0.0146 (6) | 0.0148 (6) | 0.0140 (6) | −0.0025 (4) | −0.0024 (4) | −0.0027 (5) |
| C7 | 0.0109 (6) | 0.0129 (6) | 0.0142 (6) | −0.0016 (4) | −0.0035 (4) | −0.0005 (4) |
| N3 | 0.0162 (5) | 0.0139 (5) | 0.0173 (6) | −0.0033 (4) | −0.0034 (4) | −0.0017 (4) |
| N4 | 0.0207 (6) | 0.0166 (6) | 0.0173 (6) | −0.0050 (4) | −0.0047 (4) | −0.0025 (4) |
| O1W | 0.0177 (5) | 0.0171 (5) | 0.0203 (5) | −0.0020 (4) | −0.0038 (4) | −0.0056 (4) |
| O2W | 0.0154 (4) | 0.0169 (5) | 0.0161 (5) | −0.0045 (3) | −0.0037 (3) | 0.0029 (4) |
| O1—C7 | 1.2579 (15) | C4—C5 | 1.3886 (18) |
| O2—C7 | 1.2746 (15) | C5—C6 | 1.3855 (18) |
| O3—N2 | 1.2299 (14) | C5—H5 | 0.9500 |
| O4—N2 | 1.2280 (14) | C6—H6 | 0.9500 |
| N1—C2 | 1.3644 (16) | N3—N4 | 1.4492 (15) |
| N1—H1N | 0.873 (9) | N3—H3N | 0.864 (9) |
| N1—H2N | 0.877 (9) | N3—H4N | 0.865 (9) |
| N2—C4 | 1.4692 (15) | N3—H5N | 0.872 (9) |
| C1—C6 | 1.4010 (17) | N4—H6N | 0.864 (9) |
| C1—C2 | 1.4153 (17) | N4—H7N | 0.865 (9) |
| C1—C7 | 1.5035 (16) | O1W—H1W | 0.856 (14) |
| C2—C3 | 1.4106 (17) | O1W—H2W | 0.834 (13) |
| C3—C4 | 1.3760 (18) | O2W—H3W | 0.847 (13) |
| C3—H3 | 0.9500 | O2W—H4W | 0.852 (13) |
| C2—N1—H1N | 118.5 (11) | C6—C5—H5 | 121.8 |
| C2—N1—H2N | 117.4 (10) | C4—C5—H5 | 121.8 |
| H1N—N1—H2N | 117.3 (15) | C5—C6—C1 | 122.44 (12) |
| O4—N2—O3 | 122.87 (10) | C5—C6—H6 | 118.8 |
| O4—N2—C4 | 118.34 (10) | C1—C6—H6 | 118.8 |
| O3—N2—C4 | 118.79 (10) | O1—C7—O2 | 123.11 (11) |
| C6—C1—C2 | 119.62 (11) | O1—C7—C1 | 119.32 (11) |
| C6—C1—C7 | 118.73 (11) | O2—C7—C1 | 117.57 (11) |
| C2—C1—C7 | 121.65 (11) | N4—N3—H3N | 109.2 (10) |
| N1—C2—C3 | 118.52 (11) | N4—N3—H4N | 105.8 (10) |
| N1—C2—C1 | 123.24 (11) | H3N—N3—H4N | 108.1 (15) |
| C3—C2—C1 | 118.13 (11) | N4—N3—H5N | 112.3 (10) |
| C4—C3—C2 | 119.56 (11) | H3N—N3—H5N | 110.6 (15) |
| C4—C3—H3 | 120.2 | H4N—N3—H5N | 110.6 (15) |
| C2—C3—H3 | 120.2 | N3—N4—H6N | 105.4 (11) |
| C3—C4—C5 | 123.75 (11) | N3—N4—H7N | 106.2 (11) |
| C3—C4—N2 | 117.70 (11) | H6N—N4—H7N | 108.5 (16) |
| C5—C4—N2 | 118.54 (11) | H1W—O1W—H2W | 106.4 (15) |
| C6—C5—C4 | 116.48 (11) | H3W—O2W—H4W | 108.3 (15) |
| C6—C1—C2—N1 | −176.80 (11) | O3—N2—C4—C5 | −171.63 (11) |
| C7—C1—C2—N1 | 2.39 (18) | C3—C4—C5—C6 | −0.98 (18) |
| C6—C1—C2—C3 | −0.76 (17) | N2—C4—C5—C6 | 178.13 (10) |
| C7—C1—C2—C3 | 178.43 (10) | C4—C5—C6—C1 | 0.86 (18) |
| N1—C2—C3—C4 | 176.90 (11) | C2—C1—C6—C5 | −0.02 (18) |
| C1—C2—C3—C4 | 0.67 (17) | C7—C1—C6—C5 | −179.23 (11) |
| C2—C3—C4—C5 | 0.22 (18) | C6—C1—C7—O1 | −161.98 (11) |
| C2—C3—C4—N2 | −178.90 (10) | C2—C1—C7—O1 | 18.83 (17) |
| O4—N2—C4—C3 | −173.12 (10) | C6—C1—C7—O2 | 18.36 (16) |
| O3—N2—C4—C3 | 7.53 (16) | C2—C1—C7—O2 | −160.84 (11) |
| O4—N2—C4—C5 | 7.72 (16) |
| H··· | ||||
| N1—H1 | 0.88 (1) | 2.07 (1) | 2.7098 (15) | 129 (1) |
| N1—H2 | 0.88 (1) | 2.29 (1) | 3.1403 (16) | 165 (1) |
| N3—H3 | 0.86 (1) | 1.97 (1) | 2.8136 (15) | 167 (1) |
| N3—H4 | 0.87 (2) | 2.25 (2) | 2.8969 (16) | 132 (1) |
| N3—H4 | 0.87 (2) | 2.34 (1) | 3.0739 (15) | 143 (1) |
| N3—H5 | 0.87 (1) | 1.93 (2) | 2.7862 (15) | 167 (1) |
| N4—H6 | 0.87 (1) | 2.20 (1) | 3.0623 (15) | 178 (1) |
| N4—H7 | 0.87 (1) | 2.20 (1) | 3.0106 (15) | 155 (1) |
| O1 | 0.86 (2) | 1.97 (2) | 2.8071 (14) | 166 (2) |
| O1 | 0.83 (2) | 1.90 (2) | 2.7208 (13) | 171 (2) |
| O2 | 0.85 (2) | 1.92 (2) | 2.7479 (13) | 165 (2) |
| O2 | 0.85 (2) | 1.91 (2) | 2.7627 (14) | 175 (2) |