Literature DB >> 28429299

Participation of C-H Protons in the Dissociation of a Proton Deficient Dipeptide.

Damodar Koirala1, Sabyasachy Mistry1, Paul G Wenthold2.   

Abstract

The dissociation of anionic dipeptides Phe*Gly and GlyPhe*, where Phe* refers to sulfonated phenyl alanine, has been investigated by using ion trap mass spectrometry. The dipeptides undergo collision-induced dissociation (CID) to give the same products, indicating that they rearrange to a common structure before dissociation. The rearrangement does not occur with the dipeptide methyl esters. The structures of the b2 ions were investigated to determine the effect that having a remote, anionic site has on product formation. Comparison with the CID spectra for authentic structures shows that the b2 ion obtained from GlyPhe* has predominantly a diketopiperazine structure. The CID spectra for the Phe*Gly b2 ion and the authentic oxazolone are similar, but differences in intensity suggest a two-component mixture. Isotopic labeling studies are consistent with the formation of two products, with one resulting from loss of a non-mobile proton on the Gly α-carbon. The results are attributed to the formation of an oxazole and oxazolone enol product. Electronic structure calculations predict that the enol structure of the Phe*Gly b2 ion is lower in energy than the keto version due to intramolecular hydrogen bonding with the sulfonate group. Graphical Abstract ᅟ.

Entities:  

Keywords:  Canonical structures; Charge remote fragmentation; Diketopiperazine; Dipeptide dissociation; Oxazolone; b2 Ions

Year:  2017        PMID: 28429299     DOI: 10.1007/s13361-017-1662-7

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  42 in total

Review 1.  Collision-induced fragmentations of the (M-H)- parent anions of underivatized peptides: an aid to structure determination and some unusual negative ion cleavages.

Authors:  John H Bowie; Craig S Brinkworth; Suresh Dua
Journal:  Mass Spectrom Rev       Date:  2002 Mar-Apr       Impact factor: 10.946

2.  A mechanistic investigation of the enhanced cleavage at histidine in the gas-phase dissociation of protonated peptides.

Authors:  George Tsaprailis; Hari Nair; Wenqing Zhong; Krishnamoorthy Kuppannan; Jean H Futrell; Vicki H Wysocki
Journal:  Anal Chem       Date:  2004-04-01       Impact factor: 6.986

3.  Diagnosing the protonation site of b2 peptide fragment ions using IRMPD in the X-H (X = O, N, and C) stretching region.

Authors:  Rajeev K Sinha; Undine Erlekam; Benjamin J Bythell; Béla Paizs; Philippe Maître
Journal:  J Am Soc Mass Spectrom       Date:  2011-06-21       Impact factor: 3.109

Review 4.  Utility of mass spectrometry for proteome analysis: part I. Conceptual and experimental approaches.

Authors:  Farid E Ahmed
Journal:  Expert Rev Proteomics       Date:  2008-12       Impact factor: 3.940

5.  The Curtin-Hammett principle in mass spectrometry.

Authors:  Laura J Haupert; John C Poutsma; Paul G Wenthold
Journal:  Acc Chem Res       Date:  2009-10-20       Impact factor: 22.384

Review 6.  De novo sequencing of peptides by MS/MS.

Authors:  Joerg Seidler; Nico Zinn; Martin E Boehm; Wolf D Lehmann
Journal:  Proteomics       Date:  2010-02       Impact factor: 3.984

7.  Mass spectrometric de novo sequencing of natural non-tryptic peptides: comparing peculiarities of collision-induced dissociation (CID) and high energy collision dissociation (HCD).

Authors:  Tatyana Yu Samgina; Egor A Vorontsov; Vladimir A Gorshkov; Konstantin A Artemenko; Roman A Zubarev; Albert T Lebedev
Journal:  Rapid Commun Mass Spectrom       Date:  2014-12-15       Impact factor: 2.419

8.  IR action spectroscopy shows competitive oxazolone and diketopiperazine formation in peptides depends on peptide length and identity of terminal residue in the departing fragment.

Authors:  L J Morrison; J Chamot-Rooke; V H Wysocki
Journal:  Analyst       Date:  2014-05-07       Impact factor: 4.616

9.  Why Are B ions stable species in peptide spectra?

Authors:  T Yalcin; C Khouw; I G Csizmadia; M R Peterson; A G Harrison
Journal:  J Am Soc Mass Spectrom       Date:  1995-12       Impact factor: 3.109

10.  Evidence of diketopiperazine and oxazolone structures for HA b2+ ion.

Authors:  Brittany R Perkins; Julia Chamot-Rooke; Sung Hwan Yoon; Ashley C Gucinski; Arpád Somogyi; Vicki H Wysocki
Journal:  J Am Chem Soc       Date:  2009-12-09       Impact factor: 15.419

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