| Literature DB >> 28422712 |
Yuan Wang1, Xuejun Yang2,3, Jianping Shi3, Yan Zhao2,3, Linlin Pan2,3, Jinqiu Zhou4, Guoqiang Wang2,3, Jianzhong Wang2,3.
Abstract
BACKGROUND: Common variants of multiple genes played a crucial role in osteonecrosis of the femoral head (ONFH) onset which was proved by many previous reports. We hypothesized that polymorphisms in NOS3, ABCB1 and IL23R were related to individual differences in alcohol sensitivity and the development of alcohol-induced ONFH.Entities:
Keywords: ABCB1; IL23R; NOS3; gene polymorphism; osteonecrosis of the femoral head
Mesh:
Substances:
Year: 2017 PMID: 28422712 PMCID: PMC5464910 DOI: 10.18632/oncotarget.16809
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Characteristics of 355 alcohol-induced ONFH male subjects
| Parameters | Cases | Controls | P value |
|---|---|---|---|
| Age [mean±SD] | 44.91 ± 9.85 | 46.02 ± 9.61 | NS |
| Sex [male] | 355 | 355 | |
| BMI (kg/m2) | |||
| ≥25 | 53 | 61 | NS |
| < 25 | 302 | 294 | NS |
SD, standard deviation: NS, notsignificant: BMI, body mass index.
Polymerase chain reaction primers of selected SNPs
| SNP ID | 1st – PCR primer sequences | 2nd – PCR primer sequences | UEP sequences |
|---|---|---|---|
| rs6693831 | ACGTTGGATGGTTACGGTCACCTTGGAAAG | ACGTTGGATGCTCAT AACCAGAAGATTCCC | TTCCCATGTGGGAAAGTTC |
| rs790631 | ACGTTGGATGGTCTTATTAGGATAAAACCCC | ACGTTGGATGCCTTTT GCATATGCAGAAT | CACAAATACAATTCTCAAGTC |
| rs4148749 | ACGTTGGATGACAGTCCCACTTGGATAAAG | ACGTTGGATGACAGAT GACACCACTTGGAG | attACACCACTTGGAGACCATATTTA |
| rs10808072 | ACGTTGGATGCCTTTGTAACTTTCCCAATG | ACGTTGGATGCCTGAA AATGTTGTGTGTTGG | ggggTTGAGAATTGTATTGCTAGTTA |
| rs13233308 | ACGTTGGATGCTGTTTCAATGATCCAGGTG | ACGTTGGATGGTTG GTGCTACCCTCAAAAT | cttcGCTACCCTCAAAATATATCCA |
| rs3918227 | ACGTTGGATGTGAGTGCCGTTCATTGTGTG | ACGTTGGATGTTCAT AATAGCCCCGACCTG | gGTCACCAACAAGAGAATG |
| rs3918184 | ACGTTGGATGCCATCGAGAAACATTACCCG | ACGTTGGATGCTTGA ATCCCTGACCTCAGC | gggagTACAGGCGTGAGCCACCA |
| rs743506 | ACGTTGGATGGAGCAAGC TAGATTGCTAGG | ACGTTGGATGAAATG CACCCCCACCAAAAG | tcccgCCCTCTGGGCTCCTCTCC |
PCR, polymorphism chain reaction; SNP, single-nucleotide polymorphism; UEP, unextended mini-sequencing primer.
Allele frequencies of polymorphic variants of the candidate genes in this study
| SNP ID | Chromosome | Position | Gene | HWE | Alleles A/B | MAF control | MAF case | Allele model | |
|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | |||||||||
| rs6693831 | 1 | 67720867 | 0.1227 | T/C | 0.254 | 0.238 | 0.91(0.72-1.17) | 0.48 | |
| rs790631 | 1 | 67676922 | 0.5857 | C/T | 0.049 | 0.061 | 1.24(0.79-1.96) | 0.35 | |
| rs4148749 | 7 | 87144413 | 0.5719 | C/G | 0.17 | 0.163 | 0.95(0.72-1.26) | 0.72 | |
| rs10808072 | 7 | 87176463 | 0.4747 | G/A | 0.341 | 0.338 | 0.99(0.79-1.23) | 0.91 | |
| rs13233308 | 7 | 87244960 | 0.9156 | T/C | 0.497 | 0.554 | 1.26(1.02-1.55) | 0.032* | |
| rs3918227 | 7 | 150700946 | 0.6408 | A/C | 0.063 | 0.063 | 1(0.65-1.53) | 1 | |
| rs3918184 | 7 | 150702219 | 0.7983 | T/C | 0.292 | 0.339 | 1.25(0.99-1.56) | 0.05 | |
| rs743506 | 7 | 150706915 | 0.6418 | G/A | 0.218 | 0.280 | 1.39(1.09-1.78) | 0.006* | |
OR, odds ratio, 95% CI, 95% confidence interval. *P < 0.05, statistical significance.
A/B stands for minor/major alleles on the control sample frequencies.
SNPs are excluded at HWE P < 0.05.
Association between single-nucleotide polymorphisms and risk of alcohol-induced ONFH based on logistic test
| SNP ID | Model | Genotype | OR (95% CI) | †OR (95% CI) | † | |
|---|---|---|---|---|---|---|
| rs6693831 | Genotype | T/C | 0.72(0.53-0.98) | 0.041* | 0.73(0.53-0.99) | 0.046* |
| Dominant | T/C | 0.79(0.59-1.07 | 0.121 | 0.80(0.59-1.08) | 0.150 | |
| Recessive | T/C | 1.57(0.83-2.94) | 0.163 | 1.67(0.88-3.15) | 0.120 | |
| Additive | T/C | 0.92(0.72-1.17) | 0.493 | 0.93(0.73-1.19) | 0.570 | |
| rs790631 | Genotype | C/T | 2.05(0.18-2.27) | 0.560 | 1.96(0.17-2.18) | 0.582 |
| Dominant | C/T | 1.23(0.76-1.99) | 0.393 | 1.26(0.77-2.03) | 0.356 | |
| Recessive | C/T | 2.01(0.81-2.22) | 0.571 | 1.92(0.17-2.13) | 0.593 | |
| Additive | C/T | 1.24(0.78-1.94) | 0.358 | 1.25(0.79-1.97) | 0.328 | |
| rs4148749 | Genotype | C/G | 0.74(0.31-1.79) | 0.511 | 0.74(0.31-1.78) | 0.498 |
| Dominant | C/G | 0.97(0.71-1.34) | 0.871 | 0.98(0.71-1.35) | 0.902 | |
| Recessive | C/G | 0.74(0.31-1.78) | 0.507 | 0.73(0.31-1.77) | 0.492 | |
| Additive | C/G | 0.95(0.72-1.25) | 0.724 | 0.95(0.72-1.26) | 0.745 | |
| rs10808072 | Genotype | G/A | 0.99(0.56-1.57) | 0.812 | 0.96(0.57-1.61) | 0.874 |
| Dominant | G/A | 1.01(0.74-1.35) | 0.983 | 1.01(0.74-1.35) | 0.982 | |
| Recessive | G/A | 0.93(0.57-1.51) | 0.774 | 0.95(0.58-1.55) | 0.845 | |
| Additive | G/A | 0.98(0.78-1.23) | 0.906 | 0.99(0.79-1.24) | 0.941 | |
| rs13233308 | Genotype | T/C | 1.59(1.04-2.43) | 0.031* | 1.57(1.03-2.39) | 0.038* |
| Dominant | T/C | 1.43(1.00-2.04) | 0.049* | 1.41(0.99-2.01) | 0.060 | |
| Recessive | T/C | 1.29(0.93-1.81) | 0.124 | 1.29(0.92-1.79) | 0.140 | |
| Additive | T/C | 1.26(1.02-1.55) | 0.033* | 1.25(1.01-1.54) | 0.041* | |
| rs3918227 | Genotype | A/C | 1.00(0.17-7.14) | 1.000 | 1.06(0.14-7.59) | 0.955 |
| Dominant | A/C | 1.00(0.63-1.57) | 1.000 | 1.01(0.64-1.58) | 0.971 | |
| Recessive | A/C | 1.00(0.14-7.13) | 1.000 | 1.06(0.15-7.17) | 0.955 | |
| Additive | A/C | 1.00(0.65-1.52) | 1.000 | 1.01(0.66-1.54) | 0.963 | |
| rs3918184 | Genotype | T/C | 1.86(1.12-3.08) | 0.016* | 1.91(1.15-3.18) | 0.012* |
| Dominant | T/C | 1.15(0.86-1.55) | 0.346 | 1.16(0.86-1.56) | 0.322 | |
| Recessive | T/C | 1.85(1.14-2.99) | 0.013* | 1.89(1.17-3.08) | 0.009* | |
| Additive | T/C | 1.23(0.99-1.54) | 0.061 | 1.25(0.99-1.55) | 0.051 | |
| rs743506 | Genotype | G/A | 2.57(1.36-4.86) | 0.004* | 2.66(1.40-5.05) | 0.003* |
| Dominant | G/A | 1.33(0.99-1.79) | 0.058 | 1.35(1.01-1.82) | 0.048* | |
| Recessive | G/A | 2.40(1.28-4.49) | 0.006* | 2.48(1.32-4.65) | 0.005* | |
| Additive | G/A | 1.38(1.09-1.75) | 0.008* | 1.39(1.10-1.78) | 0.006* |
OR, odds ratio; 95% CI, 95% confidence interval;
*P < 0.05, statistical significance. †Adjusted by age.
Haplotype analysis results of rs3918227 and rs3918184 in NOS3 gene
| Haplotype | freq(case) | freq(control) | †OR(95%CI) | † |
|---|---|---|---|---|
| CT | 0.340 | 0.293 | 1.26(1.01-1.58) | 0.044* |
| AC | 0.063 | 0.063 | 1.12(0.72-1.73) | 0.610 |
Freq, frequency; OR, odd ratio; CI, confidence interval.
*P < 0.05, statistical significance: †Adjusted by age
Figure 1Haplotype-Block Map for NOS3 Based on rs3918227, rs3918184 and rs743506
Linkage disequilibrium (LD) among single nucleotide polymorphisms (SNPs) analyzed in chromosome 7q. LD is indicated by standard color schemes with bright red for very strong LD (LD > 2, D’= 1) and pink red (LD > 2, D’< 1) for intermediate LD.