Literature DB >> 28421443

Genomic mapping of chromatin proteins by using Daminv modification of an FLP-dependent DamID approach.

A V Pindyurin1,2.   

Abstract

To identify interactions of chromatin proteins with the genome of the cell type of interest that is a part of heterologous tissues and organs of Drosophila, an FLP-dependent DamID approach was recently developed [4], which does not require sorting of cells or nuclei. Here, a modification of this approach, Daminv, is described. The modified approach was validated by generating the binding pattern of the LAM protein, a component of the inner membrane of the nuclear envelope, with the genome of glial cells of the Drosophila larval central brains.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28421443     DOI: 10.1134/S1607672917010057

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN: 1607-6729            Impact factor:   0.788


  13 in total

Review 1.  Glia development in the embryonic CNS of Drosophila.

Authors:  S Granderath; C Klämbt
Journal:  Curr Opin Neurobiol       Date:  1999-10       Impact factor: 6.627

2.  A genetic mosaic approach for neural circuit mapping in Drosophila.

Authors:  Rudolf A Bohm; William P Welch; Lindsey K Goodnight; Logan W Cox; Leah G Henry; Tyler C Gunter; Hong Bao; Bing Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-01       Impact factor: 11.205

3.  Glial cell migration in the eye disc.

Authors:  Marion Silies; Yeliz Yuva; Daniel Engelen; Annukka Aho; Tobias Stork; Christian Klämbt
Journal:  J Neurosci       Date:  2007-11-28       Impact factor: 6.167

4.  Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.

Authors:  Lars Guelen; Ludo Pagie; Emilie Brasset; Wouter Meuleman; Marius B Faza; Wendy Talhout; Bert H Eussen; Annelies de Klein; Lodewyk Wessels; Wouter de Laat; Bas van Steensel
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

5.  The B-type lamin is required for somatic repression of testis-specific gene clusters.

Authors:  Y Y Shevelyov; S A Lavrov; L M Mikhaylova; I D Nurminsky; R J Kulathinal; K S Egorova; Y M Rozovsky; D I Nurminsky
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-13       Impact factor: 11.205

6.  An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases.

Authors:  Johannes Bischof; Robert K Maeda; Monika Hediger; François Karch; Konrad Basler
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-22       Impact factor: 11.205

Review 7.  Dynamic regulation of transcriptional states by chromatin and transcription factors.

Authors:  Ty C Voss; Gordon L Hager
Journal:  Nat Rev Genet       Date:  2013-12-17       Impact factor: 53.242

8.  Genome-wide maps of nuclear lamina interactions in single human cells.

Authors:  Jop Kind; Ludo Pagie; Sandra S de Vries; Leila Nahidiazar; Siddharth S Dey; Magda Bienko; Ye Zhan; Bryan Lajoie; Carolyn A de Graaf; Mario Amendola; Geoffrey Fudenberg; Maxim Imakaev; Leonid A Mirny; Kees Jalink; Job Dekker; Alexander van Oudenaarden; Bas van Steensel
Journal:  Cell       Date:  2015-09-10       Impact factor: 41.582

Review 9.  Dam it's good! DamID profiling of protein-DNA interactions.

Authors:  Gabriel N Aughey; Tony D Southall
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-09-18       Impact factor: 5.814

10.  Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila.

Authors:  Alexey V Pindyurin; Ludo Pagie; Elena N Kozhevnikova; Joris van Arensbergen; Bas van Steensel
Journal:  Nucleic Acids Res       Date:  2016-03-21       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.