| Literature DB >> 28420113 |
Muthyala Nagarjuna Reddy1, Shaofei Zhang2, Han-Je Kim3, Olga Mass4, Masahiko Taniguchi5, Jonathan S Lindsey6.
Abstract
Synthetic bacteriochlorins-analogues of bacterioEntities:
Keywords: absorption; bacteriochlorophyll; dihydrodipyrrin; fluorescence; near-infrared; oxidation; oxocarbenium ion; resonance; self-condensation; tetrahydrodipyrrin
Mesh:
Substances:
Year: 2017 PMID: 28420113 PMCID: PMC6154299 DOI: 10.3390/molecules22040634
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Bacteriochlorophyll a, tolyporphin A, and synthetic bacteriochlorins.
Scheme 1Two distinct approaches to synthetic bacteriochlorins.
Scheme 2Possible reaction intermediates for conversion of dihydrodipyrrin–acetal 1 or dihydrodipyrrins 2 or 3 to the bacteriochlorin (top) and new target hydrodipyrrins (bottom).
Scheme 3Retrosynthetic analysis for incorporating meso-aryl groups via the E-W synthesis.
Scheme 4Synthesis of dihydrodipyrrin–carbinols and dihydrodipyrrin–acetates.
Scheme 5Self-condensation of dihydrodipyrrin–acetates.
Scheme 6Synthesis of a meso-tetraarylbacteriochlorin (B3-P).
Scheme 7Synthesis of a tetrahydrodipyrrin–acetal.
Absorption and Fluorescence Spectral Properties of meso-Arylbacteriochlorins a.
| Compound | λBy abs (nm) | λBx abs (nm) | λQx abs (nm) | λQy abs (nm) | λQy ems (nm) | Φf b |
|---|---|---|---|---|---|---|
| 356 | 382 | 503 | 726 | 729 | 0.12 | |
| 357 | 381 | 516 | 739 | 747 | 0.15 | |
| 362 c | 382 | 533 | 743 | 757 | 0.15 |
a In toluene at room temperature; b Fluorescence quantum yield; c Shoulder.
Figure 2Absorption spectrum (solid line) and fluorescence spectrum (dotted line; λexc 503 nm) of meso-di-p-tolylbacteriochlorin B1-T in toluene at room temperature.
Figure 3Bacteriochlorin used as a fluorescence standard.
Scheme 8Resonance stabilization in a dihydrodipyrrin but not tetrahydrodipyrrin.
Scheme 9Putative intermediates en route to bacteriochlorins.
Scheme 10A dipyrromethane-carbinol affords a meso-trans-A2B2-porphyrin (left); two dihydrodipyrrins conceptually afford a meso-trans-AB-bacteriochlorin (right).
Scheme 11Oxidation is required in the reaction of a dihydrodipyrrin–acetate (lower panel) but not a dihydrodipyrrin–acetal (upper panel). (Substituents have been omitted for clarity.)
Figure 4Ten bacteriochlorins for spectroscopic comparisons; the position of the long-wavelength (Qy) absorption band is included for ease of comparison. New compounds are labeled in red.
Absorption Spectral Properties of Bacteriochlorins a.
| Compound | λBy (Δ b) (nm) | λBx (Δ b) (nm) | λQx (Δ b) (nm) | λQy (Δ b) (nm) | Qy fwhm (Δ b) (nm) | ΣQy/ΣT c |
|---|---|---|---|---|---|---|
| 355 | 384 | 521 | 760 | 20 | 0.126 | |
| 362 (+7) | 388 (+4) | 535 (+14) | 759 (−1) | 25 (+5) | 0.117 | |
| 354 | 383 | 521 | 760 | 20 | 0.136 | |
| 357 (+3) | 381 (−2) | 516 (−5) | 739 (−21) | 22 (+2) | 0.106 | |
| 346 | 374 | 490 | 721 | 12 | 0.107 | |
| 356 (+10) | 382 (+8) | 503 (+13) | 726 (+5) | 14 (+2) | 0.101 | |
| 352 | 379 | 523 | 754 | 16 | 0.133 | |
| 361 f | 383 | 543 (+20) | 759 (+5) | 16 (0) | 0.125 | |
| 362 g | 382 | 533 (+10) | 743 (−11) | 27 (+11) | 0.100 | |
| 340 | 365 | 489 | 713 | 12 | 0.091 | |
| 355 (+15) | 378 (+13) | 522 (+33) | 742 (+29) | 15 (+3) | 0.091 |
a In toluene at room temperature; b Shift compared to the corresponding benchmark bacteriochlorin lacking meso-aryl substituents; c Ratio of the integrated intensities of the Qy band (ΣQy) versus the integrated intensity of the full spectrum (ΣT, 300–900 nm) for spectra plotted in wavenumber (cm−1); d [53]; e [36]; f 373 nm; g Shoulder; h [6].
Figure 5Absorption spectra of bacteriochlorins in toluene at room temperature. (A) iso-B2 (dotted) and iso-B2-T (solid); (B) B2 (dotted) and B2-T (solid); (C) B1 (dotted) and B1-T (solid); (D) B3 (dotted), B3-T (grey), and B3-P (solid); (E) B6 (dotted) and TPBC (solid); (F) TPBC (black, reprised from panel E) and B3-P (red, reprised from panel D).
Fluorescence Spectral Properties of Bacteriochlorins a.
| Compound | λQy (Δ b) (nm) | fwhm (Δ b) (nm) | Δν (cm−1) c | Φf d |
|---|---|---|---|---|
| 764 | 20 | 70 | 0.11 | |
| 766 (+2) | 25 (+5) | 120 | 0.15 | |
| 764 | 21 | 60 | 0.14 | |
| 747 (−17) | 27 (+6) | 140 | 0.15 | |
| 723 | 14 | 40 | 0.10 | |
| 729 (+6) | 18 (+4) | 60 | 0.12 | |
| 757 | 18 | 50 | 0.12 | |
| 761 (+3) | 18 (0) | 35 | 0.16 | |
| 757 (0) | 34 (+16) | 250 | 0.15 |
a In toluene at room temperature; b Shift compared to the corresponding benchmark bacteriochlorin lacking meso-aryl substituents; c Stokes shift; d Fluorescence quantum yield; e [53]; f [36].
Figure 6Fluorescence spectra of bacteriochlorins in toluene at room temperature. (A) iso-B2 (dotted) and iso-B2-T (solid); (B) B2 (dotted) and B2-T (solid); (C) B1 (dotted) and B1-T (solid); (D) B3 (dotted), B3-T (grey), and B3-P (solid).
Survey of Conditions for the Self-condensation of Carbinol 6a or Acetate 6a-Ac a.
| Entry | Reactant (mM) | Acid (mM) | Solvent | Oxidant | Conditions | Yield (%) b |
|---|---|---|---|---|---|---|
| 1 | BF3·O(Et)2 [140] | CH3CN | air | r.t., 16 h | <1 | |
| 2 | BF3·O(Et)2 [140] | CH3CN | air | reflux, 2 h | 4.3 | |
| 3 | Neat TFA c | – | air | r.t., 21 h | 0.6 | |
| 4 | 50% ( | CH2Cl2 | air | r.t., 21 h | 1.1 | |
| 5 | TMSOTf [72], DTBP [144] | CH2Cl2 | air | r.t., 4 h d | 0.9 | |
| 6 | BF3·O(Et)2 [70] | CH3CN | air | r.t., 21 h | 13 | |
| 7 | BF3·O(Et)2 [140] | CH3CN | air | r.t., 21 h | 17 | |
| 8 | BF3·O(Et)2 [280] | CH3CN | air | r.t., 21 h | 12 | |
| 9 | BF3·O(Et)2 [560] | CH3CN | air | r.t., 21 h | 4.4 | |
| 10 | BF3·O(Et)2 [50] | CH3CN | air | r.t., 21 h | 4.7 | |
| 11 | BF3·O(Et)2 [140] | CH3CN | air | reflux, 2 h | 22 | |
| 12 | BF3·O(Et)2 [140] | CH3CN | air e | r.t., 21 h | 12 | |
| 13 | BF3·O(Et)2 [140] | CH3CN | air e | reflux, 2 h | 21 | |
| 14 | BF3·O(Et)2 [140] | PhNO2 | air | reflux, 2 h | 7.1 | |
| 15 | BF3·O(Et)2 [140] | CH3CN | O2 | reflux, 2 h | 8.6 | |
| 16 | Neat TFA | – | DDQ | r.t., 1 h | 7.0 f |
a Each reaction was carried out in a 4 mL vial containing a magnetic stir bar. In each reaction, 1.0 mg of reactant (6a-Ac) and 120 μL of solvent was used (entry 10 used 427 μL of solvent); b Yields were determined spectroscopically by the intensity of the Qy band (~726 nm, assumed εQy = 120,000 M−1cm−1 [18,19]) of crude samples. The crude sample was prepared by removal of a specific amount (5–10 μL) of sample from the reaction mixture and dilution with 3 mL of CH2Cl2; c The color of the reaction mixture changed quickly (in 1 h) to a strong greenish blue. The overall shape of the absorption spectrum was closer to that of tetradehydrocorrin-like compounds; d The reaction was monitored for 21 h. The intensity of the Qy band was weak, broad and of uncertain magnitude; e Also contains PhNO2 (810 mM); f The quantity of DDQ employed was 3 equiv. The product was likely an oxobacteriochlorin.
Survey of Conditions for the Self-condensation of Dihydrodipyrrin–acetate 15-Ac a.
| Entry | Acid (mM) | Solvent | Oxidant | Conditions | Yield (%) |
|---|---|---|---|---|---|
| 1 | BF3·O(Et)2 [140] | CH3CN | air | r.t., 24 h | – c |
| 2 | BF3·O(Et)2 [140] | CH3CN | air | 80 °C, 2 h | TDC d |
| 3 | BF3·O(Et)2 [560] | CH3CN | air | 80 °C, 10 min | TDC d |
| 4 | Neat BF3·O(Et)2 | – | air | r.t., 19 h | TDC d |
| 5 | Neat TFA | – | air | r.t., 19 h | – e |
| 6 | TMSOTf [72], DTBP [144] | CH2Cl2 | air | r.t., 19 h | – e |
| 7 | TMSOTf [72], DTBP [144] | DCE | air | 80 °C, 19 h | – c |
| 8 | InCl3 [140] | Toluene | air | 80 °C, 2 h | – c |
| 9 | Bi(OTf)3 [36] | CH2Cl2 | air | r.t., 16 h | 0.8 |
| 10 | FeCl3 [9], AgOTf [18] | DCE | air | r.t., 16 h | 1.2 |
| 11 | AcOH | air | 80 °C, 2 h | 1.9 | |
| 12 | DCE | air | 50 °C, 1 h | 1.2 |
a Each reaction was carried out in a 4 mL vial containing a magnetic stir bar. In each reaction, 2.0 mg of reactant (15-Ac, 18 mM) and 0.23 mL of solvent was used; b Yields were determined spectroscopically by the intensity of the Qy band (~741 nm, εQy = 120,000 M−1cm−1 [18,19]) of crude samples. The crude sample was prepared by removal of a specific amount (5 μL) of sample from the reaction mixture and dilution with 3 mL of CH2Cl2; c No bacteriochlorin was formed; d The absorption spectrum was suggestive of tetradehydrocorrin (TDC)-like compounds; TLC analysis shows the starting material 15-Ac and no bacteriochlorin.
Survey of Conditions for the Self-condensation of Dihydrodipyrrin–carbinol 15 a.
| Entry | Reactant (mM) | Acid (mM) | Solvent | Oxidant | Conditions | Yield (%) b |
|---|---|---|---|---|---|---|
| 1 | Neat TFA | – | air | 50 °C, 24 h | -- c | |
| 2 | TFAA [45] | CH2Cl2 | air | r.t., 16 h | 1.8 | |
| 3 | TFAA [90] | CH2Cl2 | air | r.t., 24 h | 4.0 | |
| 4 | TFAA [180] | CH2Cl2 | air | r.t., 24 h | 4.2 | |
| 5 | TFAA [45] | CH2Cl2 | air | 40 °C, 24 h | 4.5 | |
| 6 | TFAA [90] | CH2Cl2 | air | 40 °C, 24 h | 10 | |
| 7 | TFAA [180] | CH2Cl2 | air | 40 °C, 24 h | 5.8 | |
| 8 | TFAA [90] | CH2Cl2 | air | 40 °C, 20 h | 4.8 | |
| 9 | TFAA [90] | CHCl3 | air | 40 °C, 24 h | 2.4 | |
| 10 | TFAA [90] | CH2Cl2 | air | 40 °C, 24 h | 10 | |
| 11 | TFAA [180] | CH2Cl2 | air | 40 °C, 24 h | 17 e | |
| 12 | Tf2O [90] | CH2Cl2 | air | r.t., 16 h | -- c | |
| 13 | Tf2O [90] | CH2Cl2 | air | 40 °C, 16 h | -- c | |
| 14 | Tf2O [90], PPh3O [180] | CH2Cl2 | air | 40 °C, 16 h | 5.2 |
a Each reaction was carried out in a 4 mL vial containing a magnetic stir bar. In each reaction, 2.0 mg of reactant (15, 4.5 μmol) was used; b Yields were determined spectroscopically by the intensity of the Qy band (~741 nm, εQy = 120,000 M−1cm−1 [18,19]) of crude samples. The crude sample was prepared by removal of a specific amount (5 µL from 18 mM, 2.5 µL from 50 mM and 10 µL from 2 mM reactions) of sample from the reaction mixture and dilution with 3 mL of CH2Cl2; c No bacteriochlorin formation; d Reaction at 23 µmol gave 13% yield; e Reaction at 23 µmol gave 11% yield.