Literature DB >> 28417372

Separation and Visualization of Glycans by Fluorophore-Assisted Carbohydrate Electrophoresis.

Mélissa Robb1, Joanne K Hobbs1, Alisdair B Boraston2.   

Abstract

Fluorophore-assisted carbohydrate electrophoresis (FACE) is a method in which a fluorophore is covalently attached to the reducing end of carbohydrates, thereby allowing visualization following high-resolution separation by electrophoresis. This method can be used for carbohydrate profiling and sequencing, as well as for the determination of the specificity of carbohydrate-active enzymes. Here, we describe and demonstrate the use of FACE to separate and visualize the glycans released following digestion of oligosaccharides by glycoside hydrolases (GHs) using two examples: (1) the digestion of chitobiose by the streptococcal β-hexosaminidase GH20C, and (2) the digestion of glycogen by the GH13 member SpuA.

Entities:  

Keywords:  ANTS; CAZymes; Electrophoresis; Fluorophore; Glycan digestion; Glycoside hydrolases

Mesh:

Substances:

Year:  2017        PMID: 28417372     DOI: 10.1007/978-1-4939-6899-2_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

1.  Properties of a family 56 carbohydrate-binding module and its role in the recognition and hydrolysis of β-1,3-glucan.

Authors:  Andrew Hettle; Alexander Fillo; Kento Abe; Patricia Massel; Benjamin Pluvinage; David N Langelaan; Steven P Smith; Alisdair B Boraston
Journal:  J Biol Chem       Date:  2017-08-21       Impact factor: 5.157

2.  Two complementary α-fucosidases from Streptococcus pneumoniae promote complete degradation of host-derived carbohydrate antigens.

Authors:  Joanne K Hobbs; Benjamin Pluvinage; Melissa Robb; Steven P Smith; Alisdair B Boraston
Journal:  J Biol Chem       Date:  2019-07-02       Impact factor: 5.157

3.  Metabolism of a hybrid algal galactan by members of the human gut microbiome.

Authors:  Craig S Robb; Joanne K Hobbs; Benjamin Pluvinage; Greta Reintjes; Leeann Klassen; Stephanie Monteith; Greta Giljan; Carolyn Amundsen; Chelsea Vickers; Andrew G Hettle; Rory Hills; Xiaohui Xing; Tony Montina; Wesley F Zandberg; D Wade Abbott; Alisdair B Boraston
Journal:  Nat Chem Biol       Date:  2022-03-14       Impact factor: 16.174

4.  Biochemical Reconstruction of a Metabolic Pathway from a Marine Bacterium Reveals Its Mechanism of Pectin Depolymerization.

Authors:  Joanne K Hobbs; Andrew G Hettle; Chelsea Vickers; Alisdair B Boraston
Journal:  Appl Environ Microbiol       Date:  2018-12-13       Impact factor: 4.792

5.  SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets.

Authors:  Darryl R Jones; Dallas Thomas; Nicholas Alger; Ata Ghavidel; G Douglas Inglis; D Wade Abbott
Journal:  Biotechnol Biofuels       Date:  2018-02-05       Impact factor: 6.040

6.  Insights into the κ/ι-carrageenan metabolism pathway of some marine Pseudoalteromonas species.

Authors:  Andrew G Hettle; Joanne K Hobbs; Benjamin Pluvinage; Chelsea Vickers; Kento T Abe; Orly Salama-Alber; Bailey E McGuire; Jan-Hendrik Hehemann; Joseph P M Hui; Fabrice Berrue; Arjun Banskota; Junzeng Zhang; Eric M Bottos; Jonathan Van Hamme; Alisdair B Boraston
Journal:  Commun Biol       Date:  2019-12-19
  6 in total

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