Literature DB >> 28415307

Decoding heat capacity features from the energy landscape.

David J Wales1.   

Abstract

A general scheme is derived to connect transitions in configuration space with features in the heat capacity. A formulation in terms of occupation probabilities for local minima that define the potential energy landscape provides a quantitative description of how contributions arise from competition between different states. The theory does not rely on a structural interpretation for the local minima, so it is equally applicable to molecular energy landscapes and the landscapes defined by abstract functions. Applications are presented for low-temperature solid-solid transitions in atomic clusters, which involve just a few local minima with different morphologies, and for cluster melting, which is driven by the landscape entropy associated with the more numerous high-energy minima. Analyzing these features in terms of the balance between states with increasing and decreasing occupation probabilities provides a direct interpretation of the underlying transitions. This approach enables us to identify a qualitatively different transition that is caused by a single local minimum associated with an exceptionally large catchment volume in configuration space for a machine learning landscape.

Year:  2017        PMID: 28415307     DOI: 10.1103/PhysRevE.95.030105

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  7 in total

1.  RNA Modeling with the Computational Energy Landscape Framework.

Authors:  Konstantin Röder; Samuela Pasquali
Journal:  Methods Mol Biol       Date:  2021

2.  Investigating the structural changes due to adenosine methylation of the Kaposi's sarcoma-associated herpes virus ORF50 transcript.

Authors:  Konstantin Röder; Amy M Barker; Adrian Whitehouse; Samuela Pasquali
Journal:  PLoS Comput Biol       Date:  2022-05-26       Impact factor: 4.779

3.  Machine learning landscapes and predictions for patient outcomes.

Authors:  Ritankar Das; David J Wales
Journal:  R Soc Open Sci       Date:  2017-07-26       Impact factor: 2.963

4.  Structure, thermodynamics, and rearrangement mechanisms in gold clusters-insights from the energy landscapes framework.

Authors:  D Schebarchov; F Baletto; D J Wales
Journal:  Nanoscale       Date:  2018-01-25       Impact factor: 7.790

5.  Multifunnel Energy Landscapes for Phosphorylated Translation Repressor 4E-BP2 and Its Mutants.

Authors:  Wei Kang; Fan Jiang; Yun-Dong Wu; David J Wales
Journal:  J Chem Theory Comput       Date:  2019-12-11       Impact factor: 6.006

6.  Calculation of absolute molecular entropies and heat capacities made simple.

Authors:  Philipp Pracht; Stefan Grimme
Journal:  Chem Sci       Date:  2021-03-25       Impact factor: 9.825

7.  Structural Disorder and Collective Behavior of Two-Dimensional Magnetic Nanostructures.

Authors:  David Gallina; G M Pastor
Journal:  Nanomaterials (Basel)       Date:  2021-05-25       Impact factor: 5.076

  7 in total

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