Literature DB >> 28414903

Nanopore Logic Operation with DNA to RNA Transcription in a Droplet System.

Masayuki Ohara1, Masahiro Takinoue2, Ryuji Kawano1.   

Abstract

This paper describes an AND logic operation with amplification and transcription from DNA to RNA, using T7 RNA polymerase. All four operations, (0 0) to (1 1), with an enzyme reaction can be performed simultaneously, using four-droplet devices that are directly connected to a patch-clamp amplifier. The output RNA molecule is detected using a biological nanopore with single-molecule translocation. Channel current recordings can be obtained using the enzyme solution. The integration of DNA logic gates into electrochemical devices is necessary to obtain output information in a human-recognizable form. Our method will be useful for rapid and confined DNA computing applications, including the development of programmable diagnostic devices.

Entities:  

Keywords:  DNA computing; droplet; lipid bilayer; microdevice; nanopore

Mesh:

Substances:

Year:  2017        PMID: 28414903     DOI: 10.1021/acssynbio.7b00101

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  8 in total

1.  Serial DNA relay in DNA logic gates by electrical fusion and mechanical splitting of droplets.

Authors:  Hiroki Yasuga; Kosuke Inoue; Ryuji Kawano; Masahiro Takinoue; Toshihisa Osaki; Koki Kamiya; Norihisa Miki; Shoji Takeuchi
Journal:  PLoS One       Date:  2017-07-10       Impact factor: 3.240

2.  Microfluidic Formation of Double-Stacked Planar Bilayer Lipid Membranes by Controlling the Water-Oil Interface.

Authors:  Kan Shoji; Ryuji Kawano
Journal:  Micromachines (Basel)       Date:  2018-05-22       Impact factor: 2.891

3.  QuipuNet: Convolutional Neural Network for Single-Molecule Nanopore Sensing.

Authors:  Karolis Misiunas; Niklas Ermann; Ulrich F Keyser
Journal:  Nano Lett       Date:  2018-06-01       Impact factor: 11.189

4.  Modulation of Photoinduced Transmembrane Currents in a Fullerene-Doped Freestanding Lipid Bilayer by a Lateral Bias.

Authors:  Teng Ma; Xingyao Feng; Takeshi Ohori; Ryusuke Miyata; Daisuke Tadaki; Daichi Yamaura; Takafumi Deguchi; Maki Komiya; Kensaku Kanomata; Fumihiko Hirose; Michio Niwano; Ayumi Hirano-Iwata
Journal:  ACS Omega       Date:  2019-10-23

5.  A nanopore interface for higher bandwidth DNA computing.

Authors:  Karen Zhang; Yuan-Jyue Chen; Delaney Wilde; Kathryn Doroschak; Karin Strauss; Luis Ceze; Georg Seelig; Jeff Nivala
Journal:  Nat Commun       Date:  2022-08-20       Impact factor: 17.694

6.  Pattern Recognition of microRNA Expression in Body Fluids Using Nanopore Decoding at Subfemtomolar Concentrations.

Authors:  Nanami Takeuchi; Moe Hiratani; Ryuji Kawano
Journal:  JACS Au       Date:  2022-06-26

7.  DNA nanotechnology assisted nanopore-based analysis.

Authors:  Taoli Ding; Jing Yang; Victor Pan; Nan Zhao; Zuhong Lu; Yonggang Ke; Cheng Zhang
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

8.  Analytical Model for Particle Capture in Nanopores Elucidates Competition among Electrophoresis, Electroosmosis, and Dielectrophoresis.

Authors:  Mauro Chinappi; Misa Yamaji; Ryuji Kawano; Fabio Cecconi
Journal:  ACS Nano       Date:  2020-11-10       Impact factor: 15.881

  8 in total

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