Literature DB >> 28409473

Peroxisome Mini-Libraries: Systematic Approaches to Study Peroxisomes Made Easy.

Noa Dahan1, Maya Schuldiner1, Einat Zalckvar2.   

Abstract

High-throughput methodologies have been extensively used in the budding yeast, Saccharomyces cerevisiae, to uncover fundamental principles of cell biology. Over the years, several collections of yeast strains (libraries) were built to enable systematic exploration of cellular functions. However, using these libraries experimentally is often labor intensive and restricted to laboratories that hold high throughput platforms. Utilizing the available full genome libraries we handpicked a subset of strains that represent all known and predicted peroxisomal proteins as well as proteins that have central roles in peroxisome biology. These smaller collections of strains, mini-libraries, can be rapidly and easily used for complicated screens by any lab. Since one of the libraries is built such that it can be easily modified in the tag, promoter and selection, we also discuss how these collections form the basis for creating a diversity of new peroxisomal libraries for future studies. Using manual tools, available in any yeast lab, coupled with few simple genetic approaches, we will show how these libraries can be "mixed and matched" to create tailor made libraries for screening. These yeast collections may now be exploited to study uncharted territories in the biology of peroxisomes by anyone, anywhere.

Entities:  

Keywords:  Genetic screen; High content; Libraries; Peroxisome; SGA; SWAT; Saccharomyces cerevisiae; Yeast

Mesh:

Substances:

Year:  2017        PMID: 28409473      PMCID: PMC7611382          DOI: 10.1007/978-1-4939-6937-1_28

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

1.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

2.  Systematic genetic analysis with ordered arrays of yeast deletion mutants.

Authors:  A H Tong; M Evangelista; A B Parsons; H Xu; G D Bader; N Pagé; M Robinson; S Raghibizadeh; C W Hogue; H Bussey; B Andrews; M Tyers; C Boone
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

Review 3.  Advanced methods for high-throughput microscopy screening of genetically modified yeast libraries.

Authors:  Yifat Cohen; Maya Schuldiner
Journal:  Methods Mol Biol       Date:  2011

4.  Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe.

Authors:  Anastasia Baryshnikova; Michael Costanzo; Scott Dixon; Franco J Vizeacoumar; Chad L Myers; Brenda Andrews; Charles Boone
Journal:  Methods Enzymol       Date:  2010-03-01       Impact factor: 1.600

5.  Functional profiling of the Saccharomyces cerevisiae genome.

Authors:  Guri Giaever; Angela M Chu; Li Ni; Carla Connelly; Linda Riles; Steeve Véronneau; Sally Dow; Ankuta Lucau-Danila; Keith Anderson; Bruno André; Adam P Arkin; Anna Astromoff; Mohamed El-Bakkoury; Rhonda Bangham; Rocio Benito; Sophie Brachat; Stefano Campanaro; Matt Curtiss; Karen Davis; Adam Deutschbauer; Karl-Dieter Entian; Patrick Flaherty; Francoise Foury; David J Garfinkel; Mark Gerstein; Deanna Gotte; Ulrich Güldener; Johannes H Hegemann; Svenja Hempel; Zelek Herman; Daniel F Jaramillo; Diane E Kelly; Steven L Kelly; Peter Kötter; Darlene LaBonte; David C Lamb; Ning Lan; Hong Liang; Hong Liao; Lucy Liu; Chuanyun Luo; Marc Lussier; Rong Mao; Patrice Menard; Siew Loon Ooi; Jose L Revuelta; Christopher J Roberts; Matthias Rose; Petra Ross-Macdonald; Bart Scherens; Greg Schimmack; Brenda Shafer; Daniel D Shoemaker; Sharon Sookhai-Mahadeo; Reginald K Storms; Jeffrey N Strathern; Giorgio Valle; Marleen Voet; Guido Volckaert; Ching-yun Wang; Teresa R Ward; Julie Wilhelmy; Elizabeth A Winzeler; Yonghong Yang; Grace Yen; Elaine Youngman; Kexin Yu; Howard Bussey; Jef D Boeke; Michael Snyder; Peter Philippsen; Ronald W Davis; Mark Johnston
Journal:  Nature       Date:  2002-07-25       Impact factor: 49.962

Review 6.  Peroxisomes take shape.

Authors:  Jennifer J Smith; John D Aitchison
Journal:  Nat Rev Mol Cell Biol       Date:  2013-12       Impact factor: 94.444

7.  One library to make them all: streamlining the creation of yeast libraries via a SWAp-Tag strategy.

Authors:  Ido Yofe; Uri Weill; Matthias Meurer; Silvia Chuartzman; Einat Zalckvar; Omer Goldman; Shifra Ben-Dor; Conny Schütze; Nils Wiedemann; Michael Knop; Anton Khmelinskii; Maya Schuldiner
Journal:  Nat Methods       Date:  2016-02-29       Impact factor: 28.547

  7 in total
  1 in total

1.  Uncovering targeting priority to yeast peroxisomes using an in-cell competition assay.

Authors:  Mira Rosenthal; Eyal Metzl-Raz; Jérôme Bürgi; Eden Yifrach; Layla Drwesh; Amir Fadel; Yoav Peleg; Doron Rapaport; Matthias Wilmanns; Naama Barkai; Maya Schuldiner; Einat Zalckvar
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-17       Impact factor: 11.205

  1 in total

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