| Literature DB >> 28409404 |
F C L Ernieenor1, G Ernna2, A Mariana2.
Abstract
Morphotaxonomy based on phenotypic traits of immature hard ticks (Acari: Ixodidae) is a skill challenge and has prompted many inexperienced acarologists to adopt DNA-based methods for identifying and discriminating the species. The aim of this study is therefore to utilize COI gene for verifying the morphological status of Haemaphysalis ticks in Peninsular Malaysia. A total of 19 on-host ticks collected from four localities were first identified using specific illustrated taxonomic keys that lead to the genus of Haemaphysalis. Genotypic traits of tick species were then verified molecularly based on cytochrome oxidase subunit I (COI) gene using polymerase chain reaction and direct sequencing. Clustering analysis was carried out by constructing a phylogenetic tree to determine the genetic variation and diversity of local Haemaphysalis ticks. Based on external morphological characterizations, all immature ticks were successfully identified down to the genus level only. Molecular analysis of the genotypic using COI gene revealed 16 individuals (84%) as Haemaphysalis hystricis, and three individuals as H. humerosa with sequence homology of 97-99 and 86-87%, respectively. Haemaphysalis hystricis were clustered in their respective monophyletic group in the phylogeny trees with a bootstrap of 100%. Furthermore, a low intraspecific variation (<0.3%) was observed among Malaysian H. hystricis but high interspecific value (>15%) recorded. This study morphologically and molecularly confirms the presence of H. hystricis in Malaysia and the findings will add value to the existing knowledge in identification of ticks in this country.Entities:
Keywords: COI gene; Haemaphysalis; Morphology; Ticks
Mesh:
Year: 2017 PMID: 28409404 PMCID: PMC5437174 DOI: 10.1007/s10493-017-0120-3
Source DB: PubMed Journal: Exp Appl Acarol ISSN: 0168-8162 Impact factor: 2.132
Fig. 1Map of the tick’s collection study sites in Peninsular Malaysia: 1 Hulu Langat, Selangor; 2 Seremban, Negeri Sembilan; 3 Janda Baik, Pahang; 4 Gunung Tebu, Terengganu
Collection of on-host ticks from four localities in Peninsular Malaysia for this study
| Locality | Code ID | Species of host | Species ID of tick (morphology) |
|---|---|---|---|
| Hulu Langat, Selangor | HL02_2 |
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| HL03_1 |
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| |
| HL07_4 |
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| |
| HL06_6 |
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| |
| HL07_15 |
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| |
| HL03_3 |
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| |
| HL07_6 |
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| |
| HL10 |
|
| |
| HL04_18 |
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| |
| HL04_13 |
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| |
| HL04_10 |
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| |
| Janda Baik, Pahang | JBB03_1 |
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| JBB03_2 |
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| JBB03_3 |
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| Seremban, Negeri Sembilan | SBN26_1 |
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| SBN26_2 |
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| Gunung Tebu, Terengganu | GT21_2 |
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| GT01_13 |
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| GT01_14 |
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|
Fig. 2External morphological characteristics of adult male Haemaphysalis ticks on dorsal (left) and ventral (right) view
Molecular identification of Haemaphysalis ticks (n = 19) from this study compared with those in GenBank and BOLD databases
| Code sample | Molecular identification | |||
|---|---|---|---|---|
| GenBank | Maximum identity (%) | BOLD | Specimen similarity (%) | |
| HL02_2 |
| 99 |
| 99.51 |
| HL03_1 |
| 99 |
| 99 |
| Hl07_4 |
| 99 |
| 99.51 |
| HL06_6 |
| 87 |
| 86.54 |
| HL07_15 |
| 99 |
| 99.50 |
| HL03_3 |
| 98 |
| 98.87 |
| HL07_6 |
| 98 |
| 98.72 |
| HL10 |
| 99 |
| 98.87 |
| HL04_18 |
| 99 |
| 99.35 |
| HL04_13 |
| 99 |
| 98.38 |
| HL04_10 |
| 99 |
| 99.34 |
| JBB03_1 |
| 99 |
| 99.17 |
| JBB03_2 |
| 99 |
| 97.45 |
| JBB03_3 |
| 99 |
| 99.19 |
| SBN26_1 |
| 99 |
| 99.02 |
| SBN26_2 |
| 99 |
| 98.88 |
| GT21_2 |
| 99 |
| 98.82 |
| GT01_13 |
| 87 |
| 86.39 |
| GT01_14 |
| 86 |
| 86.39 |
Fig. 3The Neighbor-joining tree generated from 21 sequences (including one outgroup) of Haemaphysalis hystricis and H. humerosa identified in the present study. The numbers at branches stand for bootstrap values of 1000 replications
Fig. 4The MP tree generated from 21 sequences (including one outgroup) of Haemaphysalis hystricis and H. humerosa identified in the present study. The numbers at branches stand for bootstrap values of 1000 replications
Genetic distance values of the COI DNA sequences (%) amongst the samples
| Species |
| HL 02_2B | HL 03_1 | HL 07_4 | JBB 03_1 | JBB 03_2 | JBB 03_3 | SBN 26_1 | SBN 26_2 | HL 04_10 | HL 04_13 | HL 07_5 | GT 21_2 | HL 03_3 | HL 07_6 | HL10 | HL 04_18 | HL 06_6 | GT 01_13 | GT 01_14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| – | |||||||||||||||||||
| HL02_2B | 0.5 | – | ||||||||||||||||||
| HL03_1 | 0.5 | 0 | – | |||||||||||||||||
| HL07_4 | 0.5 | 0 | 0 | – | ||||||||||||||||
| JBB03_1 | 0.5 | 0 | 0 | 0 | – | |||||||||||||||
| JBB03_2 | 0.7 | 0.2 | 0.2 | 0.2 | 0.2 | – | ||||||||||||||
| JBB03_3 | 0.5 | 0 | 0 | 0 | 0 | 0.2 | – | |||||||||||||
| SBN26_1 | 0.5 | 0 | 0 | 0 | 0 | 0.2 | 0 | – | ||||||||||||
| SBN26_2 | 0.5 | 0 | 0 | 0 | 0 | 0.2 | 0 | 0 | – | |||||||||||
| HL04_10 | 0.7 | 0.2 | 0.2 | 0.2 | 0.2 | 0.3 | 0.2 | 0.2 | 0.2 | – | ||||||||||
| HL04_13 | 0.7 | 0.2 | 0.2 | 0.2 | 0.2 | 0.3 | 0.2 | 0.2 | 0.2 | 0.3 | – | |||||||||
| HL07_5 | 0.5 | 0 | 0 | 0 | 0 | 0.2 | 0 | 0 | 0 | 0.2 | 0.2 | – | ||||||||
| GT21_2 | 0.7 | 0.2 | 0.2 | 0.2 | 0.2 | 0 | 0.2 | 0.2 | 0.2 | 0.3 | 0.3 | 0.2 | – | |||||||
| HL03_3 | 0.5 | 0 | 0 | 0 | 0 | 0.2 | 0 | 0 | 0 | 0.2 | 0.2 | 0 | 0.2 | – | ||||||
| HL07_6 | 0.7 | 0.2 | 0.2 | 0.2 | 0.2 | 0.3 | 0.2 | 0.2 | 0.2 | 0.3 | 0.3 | 0.2 | 0.3 | 0.2 | – | |||||
| HL10 | 0.7 | 0.2 | 0.2 | 0.2 | 0.2 | 0.3 | 0.2 | 0.2 | 0.2 | 0.3 | 0.3 | 0.2 | 0.3 | 0.2 | 0 | – | ||||
| HL04_18 | 0.7 | 0.2 | 0.2 | 0.2 | 0.2 | 0.3 | 0.2 | 0.2 | 0.2 | 0.3 | 0.3 | 0.2 | 0.3 | 0.2 | 0 | 0 | – | |||
| HL06_6 | 15.7 | 15.9 | 15.9 | 15.9 | 15.9 | 16.1 | 15.9 | 15.9 | 15.9 | 15.7 | 15.9 | 15.9 | 16.1 | 15.9 | 16.1 | 16.1 | 16.1 | – | ||
| GT01_13 | 15.7 | 15.9 | 15.9 | 15.9 | 15.9 | 16.1 | 15.9 | 15.9 | 15.9 | 15.7 | 15.9 | 15.9 | 16.1 | 15.9 | 16.1 | 16.1 | 16.1 | 0.3 | – | |
| GT01_14 | 15.7 | 15.9 | 15.9 | 15.9 | 15.9 | 16.1 | 15.9 | 15.9 | 15.9 | 15.7 | 15.9 | 15.9 | 16.1 | 15.9 | 16.1 | 16.1 | 16.1 | 0.3 | 0 | – |