Literature DB >> 28406983

An algorithm for constructing the skeleton graph of degenerate systems of linear inequalities.

José Manuel Méndez Martínez1, Jesús Urías1.   

Abstract

Derive the quantitative predictions of constraint-based models require of conversion algorithms to enumerate and construct the skeleton graph conformed by the extreme points of the feasible region, where all constraints in the model are fulfilled. The conversion is problematic when the system of linear constraints is degenerate. This paper describes a conversion algorithm that combines the best of two methods: the incremental slicing of cones that defeats degeneracy and pivoting for a swift traversal of the set of extreme points. An extensive computational practice uncovers two complementary classes of conversion problems. The two classes are distinguished by a practical measure of complexity that involves the input and output sizes. Detailed characterizations of the complexity classes and the corresponding performances of the algorithm are presented. For the benefit of implementors, a simple example illustrates the stages of the exposition.

Entities:  

Mesh:

Year:  2017        PMID: 28406983      PMCID: PMC5391119          DOI: 10.1371/journal.pone.0175819

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  7 in total

1.  Metabolic network structure determines key aspects of functionality and regulation.

Authors:  Jörg Stelling; Steffen Klamt; Katja Bettenbrock; Stefan Schuster; Ernst Dieter Gilles
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

2.  Popescu-Rohrlich correlations as a unit of nonlocality.

Authors:  Jonathan Barrett; Stefano Pironio
Journal:  Phys Rev Lett       Date:  2005-09-29       Impact factor: 9.161

3.  Simulating maximal quantum entanglement without communication.

Authors:  N J Cerf; N Gisin; S Massar; S Popescu
Journal:  Phys Rev Lett       Date:  2005-06-07       Impact factor: 9.161

4.  On delayed genetic regulatory networks with polytopic uncertainties: robust stability analysis.

Authors:  Z Wang; H Gao; J Cao; X Liu
Journal:  IEEE Trans Nanobioscience       Date:  2008-06       Impact factor: 2.935

5.  Inferring biological tasks using Pareto analysis of high-dimensional data.

Authors:  Yuval Hart; Hila Sheftel; Jean Hausser; Pablo Szekely; Noa Bossel Ben-Moshe; Yael Korem; Avichai Tendler; Avraham E Mayo; Uri Alon
Journal:  Nat Methods       Date:  2015-01-26       Impact factor: 28.547

6.  Computation of elementary modes: a unifying framework and the new binary approach.

Authors:  Julien Gagneur; Steffen Klamt
Journal:  BMC Bioinformatics       Date:  2004-11-04       Impact factor: 3.169

7.  A flexible theoretical representation for the temporal dynamics of structured populations as paths on polytope complexes.

Authors:  Armando J R Amaris; Murray P Cox
Journal:  J Math Biol       Date:  2014-10-12       Impact factor: 2.259

  7 in total
  1 in total

1.  Maximally nonlocal Clauser-Horne-Shimony-Holt scenarios.

Authors:  Jesús Urías; José Manuel Méndez Martínez
Journal:  Sci Rep       Date:  2018-05-08       Impact factor: 4.379

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.