Literature DB >> 28405781

Universal screening for microsatellite instability in colorectal cancer in the clinical genomics era: new recommendations, methods, and considerations.

Jaclyn F Hechtman1, Sumit Middha2, Zsofia K Stadler3, Ahmet Zehir2, Michael F Berger2, Efsevia Vakiani2, Martin R Weiser4, Marc Ladanyi2, Leonard B Saltz3, David S Klimstra2, Jinru Shia5.   

Abstract

Entities:  

Keywords:  Lynch Syndrome; National Comprehensive Cancer Network; Next Generation Sequencing; Next Generation Sequencing Method

Mesh：

Year:  2017        PMID： 28405781     DOI： 10.1007/s10689-017-9993-x

Source DB:  PubMed          Journal:  Fam Cancer        ISSN： 1389-9600            Impact factor:   2.375


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  10 in total

1.  Microsatellite instability detection by next generation sequencing.

Authors:  Stephen J Salipante; Sheena M Scroggins; Heather L Hampel; Emily H Turner; Colin C Pritchard
Journal:  Clin Chem       Date:  2014-06-30       Impact factor: 8.327

2.  Clinton and Trump: competing visions for the Affordable Care Act and US health care.

Authors:  Bryant Furlow
Journal:  Lancet Oncol       Date:  2016-08-30       Impact factor: 41.316

3.  Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT): A Hybridization Capture-Based Next-Generation Sequencing Clinical Assay for Solid Tumor Molecular Oncology.

Authors:  Donavan T Cheng; Talia N Mitchell; Ahmet Zehir; Ronak H Shah; Ryma Benayed; Aijazuddin Syed; Raghu Chandramohan; Zhen Yu Liu; Helen H Won; Sasinya N Scott; A Rose Brannon; Catherine O'Reilly; Justyna Sadowska; Jacklyn Casanova; Angela Yannes; Jaclyn F Hechtman; Jinjuan Yao; Wei Song; Dara S Ross; Alifya Oultache; Snjezana Dogan; Laetitia Borsu; Meera Hameed; Khedoudja Nafa; Maria E Arcila; Marc Ladanyi; Michael F Berger
Journal:  J Mol Diagn       Date:  2015-03-20       Impact factor: 5.568

Review 4.  Evolving approach and clinical significance of detecting DNA mismatch repair deficiency in colorectal carcinoma.

Authors:  Jinru Shia
Journal:  Semin Diagn Pathol       Date:  2015-02-04       Impact factor: 3.464

5.  Molecular and clinical characteristics of MSH6 variants: an analysis of 25 index carriers of a germline variant.

Authors:  Maran J W Berends; Ying Wu; Rolf H Sijmons; Rob G J Mensink; Tineke van der Sluis; Jannet M Hordijk-Hos; Elisabeth G E de Vries; Harry Hollema; Arend Karrenbeld; Charles H C M Buys; Ate G J van der Zee; Robert M W Hofstra; Jan H Kleibeuker
Journal:  Am J Hum Genet       Date:  2002-01       Impact factor: 11.025

6.  An optimized pentaplex PCR for detecting DNA mismatch repair-deficient colorectal cancers.

Authors:  Ajay Goel; Takeshi Nagasaka; Richard Hamelin; C Richard Boland
Journal:  PLoS One       Date:  2010-02-24       Impact factor: 3.240

7.  Reliable Detection of Mismatch Repair Deficiency in Colorectal Cancers Using Mutational Load in Next-Generation Sequencing Panels.

Authors:  Zsofia K Stadler; Francesca Battaglin; Sumit Middha; Jaclyn F Hechtman; Christina Tran; Andrea Cercek; Rona Yaeger; Neil H Segal; Anna M Varghese; Diane L Reidy-Lagunes; Nancy E Kemeny; Erin E Salo-Mullen; Asad Ashraf; Martin R Weiser; Julio Garcia-Aguilar; Mark E Robson; Kenneth Offit; Maria E Arcila; Michael F Berger; Jinru Shia; David B Solit; Leonard B Saltz
Journal:  J Clin Oncol       Date:  2016-03-28       Impact factor: 44.544

8.  Immunohistochemistry versus microsatellite instability testing for screening colorectal cancer patients at risk for hereditary nonpolyposis colorectal cancer syndrome. Part I. The utility of immunohistochemistry.

Authors:  Jinru Shia
Journal:  J Mol Diagn       Date:  2008-06-13       Impact factor: 5.568

9.  MSIsensor: microsatellite instability detection using paired tumor-normal sequence data.

Authors:  Beifang Niu; Kai Ye; Qunyuan Zhang; Charles Lu; Mingchao Xie; Michael D McLellan; Michael C Wendl; Li Ding
Journal:  Bioinformatics       Date:  2013-12-25       Impact factor: 6.937

10.  MSIseq: Software for Assessing Microsatellite Instability from Catalogs of Somatic Mutations.

Authors:  Mi Ni Huang; John R McPherson; Ioana Cutcutache; Bin Tean Teh; Patrick Tan; Steven G Rozen
Journal:  Sci Rep       Date:  2015-08-26       Impact factor: 4.379
  10 in total
  9 in total

1.  Clinical Sequencing Defines the Genomic Landscape of Metastatic Colorectal Cancer.

Authors:  Rona Yaeger; Walid K Chatila; Marla D Lipsyc; Jaclyn F Hechtman; Andrea Cercek; Francisco Sanchez-Vega; Gowtham Jayakumaran; Sumit Middha; Ahmet Zehir; Mark T A Donoghue; Daoqi You; Agnes Viale; Nancy Kemeny; Neil H Segal; Zsofia K Stadler; Anna M Varghese; Ritika Kundra; Jianjiong Gao; Aijazuddin Syed; David M Hyman; Efsevia Vakiani; Neal Rosen; Barry S Taylor; Marc Ladanyi; Michael F Berger; David B Solit; Jinru Shia; Leonard Saltz; Nikolaus Schultz
Journal:  Cancer Cell       Date:  2018-01-08       Impact factor: 31.743

2.  Next-Generation Sequencing-Based Assessment of JAK2, PD-L1, and PD-L2 Copy Number Alterations at 9p24.1 in Breast Cancer: Potential Implications for Clinical Management.

Authors:  Sounak Gupta; Chad M Vanderbilt; Paolo Cotzia; Javier A Arias-Stella; Jason C Chang; Ahmet Zehir; Ryma Benayed; Khedouja Nafa; Pedram Razavi; David M Hyman; José Baselga; Michael F Berger; Marc Ladanyi; Maria E Arcila; Dara S Ross
Journal:  J Mol Diagn       Date:  2018-12-18       Impact factor: 5.568

3.  Reliable Pan-Cancer Microsatellite Instability Assessment by Using Targeted Next-Generation Sequencing Data.

Authors:  Ahmet Zehir; Jaclyn F Hechtman; Sumit Middha; Liying Zhang; Khedoudja Nafa; Gowtham Jayakumaran; Donna Wong; Hyunjae R Kim; Justyna Sadowska; Michael F Berger; Deborah F Delair; Jinru Shia; Zsofia Stadler; David S Klimstra; Marc Ladanyi
Journal:  JCO Precis Oncol       Date:  2017-10-03

4.  A new hereditary colorectal cancer network in the Middle East and eastern mediterranean countries to improve care for high-risk families.

Authors:  Zeinab Ghorbanoghli; Carol Jabari; Walid Sweidan; Wail Hammoudeh; George Cortas; Ala I Sharara; Amal Abedrabbo; Ijad Hourani; Bahareh Mahjoubi; Keivan Majidzadeh; Nurdan Tözün; Hadia Ziada-Bouchaar; Waseem Hamoudi; Osama Diab; Hamid Reza Khorram Khorshid; Henry Lynch; Hans Vasen
Journal:  Fam Cancer       Date:  2018-04       Impact factor: 2.375

5.  Retained mismatch repair protein expression occurs in approximately 6% of microsatellite instability-high cancers and is associated with missense mutations in mismatch repair genes.

Authors:  Jaclyn F Hechtman; Satshil Rana; Sumit Middha; Zsofia K Stadler; Alicia Latham; Ryma Benayed; Robert Soslow; Marc Ladanyi; Rona Yaeger; Ahmet Zehir; Jinru Shia
Journal:  Mod Pathol       Date:  2019-12-19       Impact factor: 7.842

6.  Impact of Pre-Analytical Factors on MSI Test Accuracy in Mucinous Colorectal Adenocarcinoma: A Multi-Assay Concordance Study.

Authors:  Umberto Malapelle; Paola Parente; Francesco Pepe; Caterina De Luca; Pellegrino Cerino; Claudia Covelli; Mariangela Balestrieri; Gianluca Russo; Antonio Bonfitto; Pasquale Pisapia; Fabiola Fiordelisi; Maria D'Armiento; Dario Bruzzese; Fotios Loupakis; Filippo Pietrantonio; Maria Triassi; Matteo Fassan; Giancarlo Troncone; Paolo Graziano
Journal:  Cells       Date:  2020-09-02       Impact factor: 6.600

7.  A pan-cancer analysis revealing the role of TIGIT in tumor microenvironment.

Authors:  Jie Wen; Xueyi Mao; Quan Cheng; Zhixiong Liu; Fangkun Liu
Journal:  Sci Rep       Date:  2021-11-18       Impact factor: 4.379

8.  Germline mismatch repair gene variants analyzed by universal sequencing in Japanese cancer patients.

Authors:  Yoshimi Kiyozumi; Hiroyuki Matsubayashi; Yasue Horiuchi; Satomi Higashigawa; Takuma Oishi; Masato Abe; Sumiko Ohnami; Kenichi Urakami; Takeshi Nagashima; Masatoshi Kusuhara; Hidehiko Miyake; Ken Yamaguchi
Journal:  Cancer Med       Date:  2019-08-06       Impact factor: 4.452

Review 9.  Current prognostic and predictive biomarkers for gastrointestinal tumors in clinical practice.

Authors:  Matteo Fassan; Aldo Scarpa; Andrea Remo; Giovanna De Maglio; Giancarlo Troncone; Antonio Marchetti; Claudio Doglioni; Giuseppe Ingravallo; Giuseppe Perrone; Paola Parente; Claudio Luchini; Luca Mastracci
Journal:  Pathologica       Date:  2020-09
  9 in total

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