Literature DB >> 28402209

Culturomics: A New Kid on the Block of OMICS to Enable Personalized Medicine.

Manousos E Kambouris1,2, Cristiana Pavlidis1, Efthymios Skoufas3, Michael Arabatzis4, Maria Kantzanou5, Aristea Velegraki4, George P Patrinos3,6.   

Abstract

This innovation analysis highlights the underestimated and versatile potential of the new field of culturomics and examines its relation to other OMICS system sciences such as infectiomics, metabolomics, phenomics, and pharmacomicrobiomics. The advent of molecular biology, followed by the emergence of various disciplines of the genomics, and most importantly metagenomics, brought about the sharp decline of conventional microbiology methods. Emergence of culturomics has a natural synergy with therapeutic and clinical genomic approaches so as to realize personalized medicine. Notably, the concept of culturomics expands on that of phenomics and allows a reintroduction of the culture-based phenotypic characterization into the 21st century research repertoire, bolstered by robust technology for automated and massive execution, but its potential is largely unappreciated at present; the few available references show unenthusiastic pursuit and in narrow applications. This has not to be so: depending on the specific brand of culturomics, the scope of applications may extend to medicine, agriculture, environmental sciences, pharmacomicrobiomics, and biotechnology innovation. Moreover, culturomics may produce Big Data. This calls for a new generation of data scientists and innovative ways of harnessing and valorizing Big Data beyond classical genomics. Much more detailed and objective classification and identification of microbiota may soon be at hand through culturomics, thus enabling precision diagnosis toward truly personalized medicine. Culturomics may both widen the scope of microbiology and improve its contributions to diagnostics and personalized medicine, characterizing microbes and determining their associations with health and disease dynamics.

Entities:  

Keywords:  big data; culturomics; microbiology; personalized medicine; phenomics

Mesh:

Year:  2017        PMID: 28402209     DOI: 10.1089/omi.2017.0017

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  5 in total

Review 1.  Recent systems biology approaches for probiotics use in health aspects: a review.

Authors:  Monika Yadav; Pratyoosh Shukla
Journal:  3 Biotech       Date:  2019-11-11       Impact factor: 2.406

2.  Culture-enriched human gut microbiomes reveal core and accessory resistance genes.

Authors:  Frédéric Raymond; Maurice Boissinot; Amin Ahmed Ouameur; Maxime Déraspe; Pier-Luc Plante; Sewagnouin Rogia Kpanou; Ève Bérubé; Ann Huletsky; Paul H Roy; Marc Ouellette; Michel G Bergeron; Jacques Corbeil
Journal:  Microbiome       Date:  2019-04-05       Impact factor: 14.650

3.  "Bacterial Consortium": A Potential Evolution of Fecal Microbiota Transplantation for the Treatment of Clostridioides difficile Infection.

Authors:  Gianluca Quaranta; Gianluca Ianiro; Flavio De Maio; Alessandra Guarnaccia; Giovanni Fancello; Chiara Agrillo; Federica Iannarelli; Stefano Bibbo; Amedeo Amedei; Maurizio Sanguinetti; Giovanni Cammarota; Luca Masucci
Journal:  Biomed Res Int       Date:  2022-08-08       Impact factor: 3.246

4.  Knowledge database assisted gene marker selection for chronic lymphocytic leukemia.

Authors:  Xixi Xiang; Yu-Ping Wang; Hongbao Cao; Xi Zhang
Journal:  J Int Med Res       Date:  2018-07-12       Impact factor: 1.671

Review 5.  Multi-omics: Opportunities for research on mechanism of type 2 diabetes mellitus.

Authors:  Shuai Wang; Hui Yong; Xiao-Dong He
Journal:  World J Diabetes       Date:  2021-07-15
  5 in total

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