| Literature DB >> 28400557 |
Xue-Rui You1, Lin-Yan Feng1, Rui Li1, Hua-Jin Zhai2,3.
Abstract
We report a computational study on the structures and bonding of a charged molecular alloy D 2h [Pd2As14]4- (1), as well as a model D 2h [Au2Sb14]4- (2) cluster. Our effort makes use of an array of quantum chemistry tools: canonical molecular orbital analysis, adaptive natural density partitioning, natural bond orbital analysis, orbital composition analysis, and nucleus independent chemical shift calculations. Both clusters consist of two X7 (X = As, Sb) cages, which are interconnected via a M2 (M = Pd, Au) dumbbell, featuring two distorted square-planar MX4 units. Excluding the Pd/As or Au/Sb lone-pairs, clusters 1 and 2 are 50- and 44-electron systems, respectively, of which 32 electrons are for two-center two-electron (2c-2e) As-As or Sb-Sb σ bonds and an additional 16 electrons in 1 for 2c-2e Pd-As σ bonds. No covalent Pd-Pd or Au-Au bond is present in the systems. Cluster 1 is shown to possess two globally delocalized σ electrons, whereas 2 has two σ sextets (each associated with an AuSb4 fragment). Thus, 1 and 2 conform to the (4n + 2) Hückel rule, for n = 0 and 1, respectively, rendering them σ-aromaticity.Entities:
Year: 2017 PMID: 28400557 PMCID: PMC5429782 DOI: 10.1038/s41598-017-00867-5
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Optimized D 2 structure of [Pd2As14]4− (1) cluster at the PBE0/def2-TZVP level. Bond distances (in Å): As-As, 2.38–2.46; Pd-Pd, 2.75; As-Pd, 2.50. Bond angles (in degrees): ∠AsPdAs, 76.30–172.68; ∠PdAsAs, 93.66–100.25; ∠AsAsAs, 78.00–108.42.
Optimized geometric structure of D 2 [Pd2As14]4− (1) cluster at the PBE0/def2-TZVP level.
| bonda | Pd(1)-Pd(2) | Pd(1/2)-As(iii) | As(i)-As(ii) | As(ii)-As(iii) | As(iii)-As(iii)b | |
|---|---|---|---|---|---|---|
| bond distance | calc. | 2.75 | 2.50 | 2.38 | 2.46 | 2.43 |
| exptl.c | 2.7144(6) | 2.4770(5) | 2.3616–2.4455(7) | |||
| Wiberg index | 0.250 | 0.543 | 1.089 | 0.903 | 1.030 | |
| Pd/As center | Pd | As(i) | As(ii) | As(iii) | ||
| natural charged | −0.671 | −0.602 | −0.161 | −0.102 | ||
The calculated bond distances (in Å) are compared with those from synthetic experiment. Also presented are the Wiberg bond indices and natural atomic charges (in |e|) via the natural bond orbital (NBO) analysis.
aThe As atoms in [Pd2As14]4− (1) may be classified into three types. As(i): two bridging As atoms; As(ii): four As atoms that are tricoordinated with As; As(iii): eight As atoms linked to the Pd atoms.
bOnly four As(iii)-As(iii) bonds are present in 1, which link the two square-planar PdAs4 units (Fig. 1).
cExperimental data from ref. 24.
dCharge per Pd or As atom.
Figure 2Pictures of selected canonical molecular orbitals (CMOs) in [Pd2As14]4− (1), calculated at the PBE0/def2-TZVP level. (a) CMOs for 16 two-center two-electron (2c-2e) As-As σ bonds. (b) CMOs for eight 2c-2e Pd-As σ bonds. (c) CMO for the globally delocalized σ bond. Additional CMOs are 6 pairs of nonbonding Pd 4d electrons (including four lone-pairs), fourteen As 4s lone-pairs, and two As 4p lone-pairs; see Fig. S5 in the Supplementary Information.
Figure 3Bonding pattern for D 2 [Pd2As14]4− (1) cluster as revealed from the adaptive natural density partitioning (AdNDP) analysis. Occupation numbers (ONs) are shown.
Composition analysis for selected canonical molecular orbitals (CMOs) in D 2 [Pd2As14]4− (1) and [Au2Sb14]4− (2) clusters at the PBE0/def2-TZVP level.
| Complex | CMOa | Pd/Au (%) | As/Sb (%) | |||
|---|---|---|---|---|---|---|
| s | p | d | s | p | ||
| [Pd2As14]4− | HOMO | 7.84 | 7.22 | 39.1 | 1.44 | 43.48 |
| [Au2Sb14]4− | HOMO | — | 1.66 | — | — | 87.52 |
| HOMO-4 | — | 1.86 | 1.68 | 2.16 | 92.76 | |
| HOMO-10 | — | — | — | 7.12 | 91.12 | |
| HOMO-12 | — | 3.54 | 3.86 | — | 89.76 | |
| HOMO-13 | 23.78 | 2.86 | 16.32 | 9.0 | 47.1 | |
| HOMO-25 | 31.82 | — | 6.02 | — | 45.0 | |
aThese are the only delocalized CMOs in clusters 1 and 2.
Figure 4Model cluster [Au2Sb14]4− (2). (a) Optimized D 2 structure at the PBE0/def2-TZVP level. (b) Bonding pattern on the basis of AdNDP analysis. Occupation numbers (ONs) are shown.
Figure 5Comparison of one of the σ sextets in [Au2Sb14]4− (2) and the prototypical π sextet in benzene. These σ or π bonds are generated from the adaptive natural density partitioning (AdNDP) analysis; two sets of σ sextet are present in [Au2Sb14]4− (2).