Literature DB >> 28399628

Examination of Mixtures Containing Sphingomyelin and Cholesterol by Molecular Dynamics Simulations.

Eric Wang1, Jeffery B Klauda1.   

Abstract

The all-atom CHARMM36 (C36) force field is used to simulate bilayers of pure palmitoylsphingomyelin (PSM) as well as binary mixtures of PSM and stearoylsphingomyelin (SSM) at various cholesterol concentrations (XC) and temperatures. C36 simulation data is in good agreement with experimental deuterium order parameters and previous computational results, providing evidence of the utility of the force field for potentially studying more complex membranes. The area compressibility modulus is shown to achieve a large value of 2.82 ± 0.08 N/m in cholesterol-rich membranes (XC = 0.50). Surface area per lipid (SA/lip), tilt angle, membrane thicknesses, and acyl chain ordering are shown to have strong dependencies on cholesterol concentration. Relaxation times also indicate cholesterol dependence and show a strong preference for rotational axial motion over wobbling motion. Radial distribution functions and lipid clustering indicate strong relationships between lateral ordering and hydrogen bonding, which is long lived in SM membranes. These interactions lead to strong self-association of cholesterol at high concentrations, causing shielding from further SM-cholesterol interactions. The importance of a ternary component on SM-SM hydrogen bonds is revealed in light of previous results and is consequential in the modeling of lipid rafts.

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Year:  2017        PMID: 28399628     DOI: 10.1021/acs.jpcb.7b01832

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

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Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

2.  Cholesterol-Induced Conformational Change in the Sphingomyelin Headgroup.

Authors:  Shinya Hanashima; Kazuhiro Murakami; Michihiro Yura; Yo Yano; Yuichi Umegawa; Hiroshi Tsuchikawa; Nobuaki Matsumori; Sangjae Seo; Wataru Shinoda; Michio Murata
Journal:  Biophys J       Date:  2019-06-25       Impact factor: 4.033

3.  Molecular substructure of the liquid-ordered phase formed by sphingomyelin and cholesterol: sphingomyelin clusters forming nano-subdomains are a characteristic feature.

Authors:  Michio Murata; Nobuaki Matsumori; Masanao Kinoshita; Erwin London
Journal:  Biophys Rev       Date:  2022-06-11

4.  Comparison of Additive and Polarizable Models with Explicit Treatment of Long-Range Lennard-Jones Interactions Using Alkane Simulations.

Authors:  Alison N Leonard; Andrew C Simmonett; Frank C Pickard; Jing Huang; Richard M Venable; Jeffery B Klauda; Bernard R Brooks; Richard W Pastor
Journal:  J Chem Theory Comput       Date:  2018-01-09       Impact factor: 6.006

Review 5.  Microscopic view of lipids and their diverse biological functions.

Authors:  Po-Chao Wen; Paween Mahinthichaichan; Noah Trebesch; Tao Jiang; Zhiyu Zhao; Eric Shinn; Yuhang Wang; Mrinal Shekhar; Karan Kapoor; Chun Kit Chan; Emad Tajkhorshid
Journal:  Curr Opin Struct Biol       Date:  2018-07-23       Impact factor: 6.809

6.  Influence of the membrane environment on cholesterol transfer.

Authors:  Jeffrey Michael Breidigan; Natalie Krzyzanowski; Yangmingyue Liu; Lionel Porcar; Ursula Perez-Salas
Journal:  J Lipid Res       Date:  2017-10-18       Impact factor: 5.922

7.  Lipid interactions of an actinoporin pore-forming oligomer.

Authors:  Aliasghar Sepehri; Binod Nepal; Themis Lazaridis
Journal:  Biophys J       Date:  2021-02-20       Impact factor: 4.033

8.  Molecular Mechanism of Resveratrol's Lipid Membrane Protection.

Authors:  Qinqin Fei; David Kent; Wesley M Botello-Smith; Fariah Nur; Saadia Nur; Abdelaziz Alsamarah; Payal Chatterjee; Maria Lambros; Yun Luo
Journal:  Sci Rep       Date:  2018-01-25       Impact factor: 4.379

  8 in total

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