Literature DB >> 28399397

Genome Architecture from a Different Angle.

Elizabeth H Finn1, Tom Misteli2.   

Abstract

The study of genome architecture has recently been advanced by new techniques combining nuclear proximity ligation and high-throughput sequencing, but independent methods to validate them have been lacking. Reporting in Nature, Beagrie et al. (2017) describe such an orthogonal technique, called genome architecture mapping, to map genomes in 3D space. Published by Elsevier Inc.

Entities:  

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Year:  2017        PMID： 28399397      PMCID： PMC6301035          DOI： 10.1016/j.devcel.2017.03.017

Source DB:  PubMed          Journal:  Dev Cell        ISSN： 1534-5807            Impact factor:   12.270


  7 in total

Review 1.  Beyond the sequence: cellular organization of genome function.

Authors:  Tom Misteli
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 2.  An evaluation of 3C-based methods to capture DNA interactions.

Authors:  Marieke Simonis; Jurgen Kooren; Wouter de Laat
Journal:  Nat Methods       Date:  2007-11       Impact factor: 28.547

3.  Interaction between transcription regulatory regions of prolactin chromatin.

Authors:  K E Cullen; M P Kladde; M A Seyfred
Journal:  Science       Date:  1993-07-09       Impact factor: 47.728

4.  An oestrogen-receptor-alpha-bound human chromatin interactome.

Authors:  Melissa J Fullwood; Mei Hui Liu; You Fu Pan; Jun Liu; Han Xu; Yusoff Bin Mohamed; Yuriy L Orlov; Stoyan Velkov; Andrea Ho; Poh Huay Mei; Elaine G Y Chew; Phillips Yao Hui Huang; Willem-Jan Welboren; Yuyuan Han; Hong Sain Ooi; Pramila N Ariyaratne; Vinsensius B Vega; Yanquan Luo; Peck Yean Tan; Pei Ye Choy; K D Senali Abayratna Wansa; Bing Zhao; Kar Sian Lim; Shi Chi Leow; Jit Sin Yow; Roy Joseph; Haixia Li; Kartiki V Desai; Jane S Thomsen; Yew Kok Lee; R Krishna Murthy Karuturi; Thoreau Herve; Guillaume Bourque; Hendrik G Stunnenberg; Xiaoan Ruan; Valere Cacheux-Rataboul; Wing-Kin Sung; Edison T Liu; Chia-Lin Wei; Edwin Cheung; Yijun Ruan
Journal:  Nature       Date:  2009-11-05       Impact factor: 49.962

5.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

6.  Tissue-of-origin-specific gene repositioning in breast and prostate cancer.

Authors:  Karen J Meaburn; Olufunmilayo Agunloye; Michelle Devine; Marc Leshner; Gregory W Roloff; Lawrence D True; Tom Misteli
Journal:  Histochem Cell Biol       Date:  2016-01-20       Impact factor: 4.304

7.  Complex multi-enhancer contacts captured by genome architecture mapping.

Authors:  Robert A Beagrie; Antonio Scialdone; Markus Schueler; Dorothee C A Kraemer; Mita Chotalia; Sheila Q Xie; Mariano Barbieri; Inês de Santiago; Liron-Mark Lavitas; Miguel R Branco; James Fraser; Josée Dostie; Laurence Game; Niall Dillon; Paul A W Edwards; Mario Nicodemi; Ana Pombo
Journal:  Nature       Date:  2017-03-08       Impact factor: 49.962
  7 in total
  2 in total

Review 1.  Three-dimensional organization and dynamics of the genome.

Authors:  Przemyslaw Szalaj; Dariusz Plewczynski
Journal:  Cell Biol Toxicol       Date:  2018-03-22       Impact factor: 6.691

Review 2.  Into the Fourth Dimension: Dysregulation of Genome Architecture in Aging and Alzheimer's Disease.

Authors:  Warren Winick-Ng; R Jane Rylett
Journal:  Front Mol Neurosci       Date:  2018-02-28       Impact factor: 5.639
  2 in total

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