Literature DB >> 28398046

Development of a 13C NMR Chemical Shift Prediction Procedure Using B3LYP/cc-pVDZ and Empirically Derived Systematic Error Correction Terms: A Computational Small Molecule Structure Elucidation Method.

Dongyue Xin1, C Avery Sader1,2, Om Chaudhary1,2, Paul-James Jones3, Klaus Wagner4, Christofer S Tautermann4, Zheng Yang3, Carl A Busacca2, Reginaldo A Saraceno1, Keith R Fandrick2, Nina C Gonnella1, Keith Horspool1, Gordon Hansen, Chris H Senanayake2.   

Abstract

An accurate and efficient procedure was developed for performing 13C NMR chemical shift calculations employing density functional theory with the gauge invariant atomic orbitals (DFT-GIAO). Benchmarking analysis was carried out, incorporating several density functionals and basis sets commonly used for prediction of 13C NMR chemical shifts, from which the B3LYP/cc-pVDZ level of theory was found to provide accurate results at low computational cost. Statistical analyses from a large data set of 13C NMR chemical shifts in DMSO are presented with TMS as the calculated reference and with empirical scaling parameters obtained from a linear regression analysis. Systematic errors were observed locally for key functional groups and carbon types, and correction factors were determined. The application of this process and associated correction factors enabled assignment of the correct structures of therapeutically relevant compounds in cases where experimental data yielded inconclusive or ambiguous results. Overall, the use of B3LYP/cc-pVDZ with linear scaling and correction terms affords a powerful and efficient tool for structure elucidation.

Entities:  

Year:  2017        PMID: 28398046     DOI: 10.1021/acs.joc.7b00321

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  3 in total

1.  An initial investigation of accuracy required for the identification of small molecules in complex samples using quantum chemical calculated NMR chemical shifts.

Authors:  Yasemin Yesiltepe; Niranjan Govind; Thomas O Metz; Ryan S Renslow
Journal:  J Cheminform       Date:  2022-09-22       Impact factor: 8.489

2.  Fully Automated Quantum-Chemistry-Based Computation of Spin-Spin-Coupled Nuclear Magnetic Resonance Spectra.

Authors:  Stefan Grimme; Christoph Bannwarth; Sebastian Dohm; Andreas Hansen; Jana Pisarek; Philipp Pracht; Jakob Seibert; Frank Neese
Journal:  Angew Chem Int Ed Engl       Date:  2017-10-11       Impact factor: 15.336

3.  An automated framework for NMR chemical shift calculations of small organic molecules.

Authors:  Yasemin Yesiltepe; Jamie R Nuñez; Sean M Colby; Dennis G Thomas; Mark I Borkum; Patrick N Reardon; Nancy M Washton; Thomas O Metz; Justin G Teeguarden; Niranjan Govind; Ryan S Renslow
Journal:  J Cheminform       Date:  2018-10-26       Impact factor: 5.514

  3 in total

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