| Literature DB >> 28396862 |
Preben William Willeberg1, Mohammad AlKhamis2, Anette Boklund1, Andres M Perez3, Claes Enøe1, Tariq Halasa1.
Abstract
We present two simple, semiquantitative model-based decision tools, based on the principle of first 14 days incidence (FFI). The aim is to estimate the likelihood and the consequences, respectively, of the ultimate size of an ongoing FMD epidemic. The tools allow risk assessors to communicate timely, objectively, and efficiently to risk managers and less technically inclined stakeholders about the potential of introducing FMD suppressive emergency vaccination. To explore the FFI principle with complementary field data, we analyzed the FMD outbreaks in Argentina in 2001, with the 17 affected provinces as the units of observation. Two different vaccination strategies were applied during this extended epidemic. In a series of 5,000 Danish simulated FMD epidemics, the numbers of outbreak herds at day 14 and at the end of the epidemics were estimated under different control strategies. To simplify and optimize the presentation of the resulting data for urgent decisions to be made by the risk managers, we estimated the sensitivity, specificity, as well as the negative and positive predictive values, using a chosen day-14 outbreak number as predictor of the magnitude of the number of remaining post-day-14 outbreaks under a continued basic control strategy. Furthermore, during an ongoing outbreak, the actual cumulative number of detected infected herds at day 14 will be known exactly. Among the number of epidemics lasting >14 days out of the 5,000 simulations under the basic control scenario, we selected those with an assumed accumulated number of detected outbreaks at day 14. The distribution of the estimated number of detected outbreaks at the end of the simulated epidemics minus the number at day 14 was estimated for the epidemics lasting more than 14 days. For comparison, the same was done for identical epidemics (i.e., seeded with the same primary outbreak herds) under a suppressive vaccination scenario. The results indicate that, during the course of an FMD epidemic, simulated likelihood predictions of the remaining epidemic size and of potential benefits of alternative control strategies can be presented to risk managers and other stakeholders in objective and easily communicable ways.Entities:
Keywords: Foot-and-Mouth Disease; disease control; epidemics; modeling; risk communication
Year: 2017 PMID: 28396862 PMCID: PMC5366315 DOI: 10.3389/fvets.2017.00043
Source DB: PubMed Journal: Front Vet Sci ISSN: 2297-1769
Detected number of outbreaks at day 14 (θ.
| Province | Number of outbreaks until day 14 θ | (ω | Number of outbreaks after day 14 | ||
|---|---|---|---|---|---|
| Detected | Predicted | ||||
| Buenos Aires | 21 | 0.2 | 1,477 | 1,189 | 1,049 |
| Catamarca | 1 | – | 0 | – | – |
| Chaco | 1 | 0.11 | 6 | 22 | 16 |
| Cordoba | 3 | 0.36 | 73 | 33 | 68 |
| Corrientes | 3 | 0.08 | 75 | 33 | 21 |
| Entre Rios | 4 | 0.4 | 159 | 40 | 98 |
| Formosa | 1 | 0.11 | 4 | 22 | 16 |
| Jujuy | 1 | 0.03 | 3 | 22 | 11 |
| La Pampa | 6 | 0.07 | 142 | 60 | 35 |
| Mendoza | 1 | – | 0 | – | – |
| Misiones | 1 | 0.3 | 10 | 22 | 36 |
| Rio Negro | 2 | – | 0 | – | – |
| Salta | 1 | 0.04 | 3 | 22 | 12 |
| San Luis | 9 | 0.09 | 17 | 108 | 67 |
| Santa Fe | 17 | 0.2 | 166 | 535 | 491 |
| Santiago del Estero | 2 | 0.06 | 30 | 27 | 16 |
| Tucuman | 3 | 0.12 | 2 | 33 | 24 |
.
Figure 1Plot of number of day 14 outbreaks against number of post-day-14 outbreaks for the Argentina 2001 FMD epidemic from the 14 provinces in the analysis. The top-right observation is the Buenos Aires province. Four provinces with small numbers of outbreaks are hidden, as they coincide with other close provincial outbreak numbers (see Table 1).
Regression model parameters estimated from the Argentina 2001 epidemic data.
| Regression coefficients | Posterior estimates | SD | Monte Carlo error | 97.5% CI | Deviance information criteria |
|---|---|---|---|---|---|
| β0 | 2.89 | 0.061 | <0.001 | (2.77, 3.00) | 1,199.61 |
| β1θ | 0.20 | 0.003 | <0.001 | (0.19, 0.21) | |
| β0 | 2.11 | 0.333 | <0.001 | (1.92, 2.30) | 934.61 |
| β1θ | 0.19 | 0.003 | <0.001 | (0.19, 0.21) | |
| β2ω | 4.28 | 0.096 | <0.001 | (3.63, 4.93) | |
.
Summary of the results of 5,000 simulated Danish FMD epidemics all starting in cattle herds; median and 5–95% CI.
| Control strategy | Epidemic duration | Infected herds | Culled herds | Vaccinated herds | Total costs (€ million) |
|---|---|---|---|---|---|
| Basic control throughout | 36 (2–128) | 22 (2–145) | 22 (2–145) | 0 | 869 (703–1,434) |
| Preemptive depopulation | 25 (2–50) | 19 (2–67) | 35 (2–150) | 0 | 807 (703–994) |
| Suppressive vaccination | 36 (2–98) | 22 (2–105) | 22 (2–105) | 24 (0–184) | 863 (703–1,284) |
.
Figure 2Plot of the number of day 14 outbreaks against the number of post-day 14 outbreaks for the 4,092 simulated Danish FMD epidemics lasting more than 14 days.
Danish-simulated FMD epidemics lasting more than 14 days: specificity, sensitivity, negative predictive value (NPV), and positive predictive value (PPV) for two alternative combinations (A and B) of the presumed observed cumulative outbreak size on day 14, and the subsequent cumulative outbreak size until the end of the epidemic.
| <15 | 2,009 | 156 | 2,165 | NPV = 93% |
| ≥15 | 1,284 | 643 | 1,927 | PPV = 33% |
| Total | 3,293 | 799 | 4,092 | |
| Sp = 61% | Se = 80% | |||
| <15 | 2,092 | 73 | 2,165 | NPV = 97% |
| ≥15 | 1,719 | 208 | 1,927 | PPV = 11% |
| Total | 3,811 | 281 | 4,092 | |
| Sp = 55% | Se = 74% | |||
Figure 3Distribution under the basic control scenario of 182 FMD-epidemics with 15 detected herds at day 14 by number of post-day 14 outbreaks. The two alternative definitions of “catastrophic” epidemics in terms of number of outbreaks are indicated.
Figure 4Distribution under the emergency vaccination scenario of the 182 epidemics with 15 detected herds at day 14 by number of post-day 14 outbreaks. The two alternative definitions of “catastrophic” epidemics in terms of number of outbreaks are indicated.