Literature DB >> 2838971

Comparative sequence analysis of the 5' noncoding region of the enteroviruses and rhinoviruses.

V M Rivera1, J D Welsh, J V Maizel.   

Abstract

A comparative sequence analysis of the 5' noncoding region of a subgroup of the picornaviruses, including the polioviruses, coxsackie B3, and the human rhinoviruses, reveals the conservation of certain features despite the divergence of sequence. In this subgroup, for which nine complete sequences are available, two long stretches of sequence, two pyrimidine-rich regions, and 22 hairpins are conserved. Based on these results, similar secondary structures encompassing the entire 5' noncoding regions of these viruses are predicted. The fact that sequence divergence occurred only in a manner that allowed conservation of these structures implicates a biologically functional role for this region. The possible roles it may have in the picornavirus life cycle are discussed.

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Year:  1988        PMID: 2838971     DOI: 10.1016/0042-6822(88)90656-3

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  82 in total

Review 1.  Methods for subtyping and molecular comparison of human viral genomes.

Authors:  M Arens
Journal:  Clin Microbiol Rev       Date:  1999-10       Impact factor: 26.132

2.  Interactions of viral protein 3CD and poly(rC) binding protein with the 5' untranslated region of the poliovirus genome.

Authors:  A V Gamarnik; R Andino
Journal:  J Virol       Date:  2000-03       Impact factor: 5.103

3.  Construction of an infectious cDNA clone of Aichi virus (a new member of the family Picornaviridae) and mutational analysis of a stem-loop structure at the 5' end of the genome.

Authors:  J Sasaki; Y Kusuhara; Y Maeno; N Kobayashi; T Yamashita; K Sakae; N Takeda; K Taniguchi
Journal:  J Virol       Date:  2001-09       Impact factor: 5.103

4.  Identification of enteroviruses by using monoclonal antibodies against a putative common epitope.

Authors:  Soo-Youn Shin; Ki-Soon Kim; Yoon-Sung Lee; Yoon-Seok Chung; Kwi-Sung Park; Doo-Sung Cheon; Byoung-Kuk Na; Yoonsung Kang; Hyang-Min Cheong; Youngjoon Moon; Jee-Hye Choi; Hang-Eui Cho; Na-Young Min; Jin-Sook Son; Young-Hoon Park; Youngmee Jee; Jae-Deuk Yoon; Chul-Yong Song; Kwang-Ho Lee
Journal:  J Clin Microbiol       Date:  2003-07       Impact factor: 5.948

5.  General primer-mediated polymerase chain reaction for detection of enteroviruses: application for diagnostic routine and persistent infections.

Authors:  G J Zoll; W J Melchers; H Kopecka; G Jambroes; H J van der Poel; J M Galama
Journal:  J Clin Microbiol       Date:  1992-01       Impact factor: 5.948

6.  A poliovirus replicon containing the chloramphenicol acetyltransferase gene can be used to study the replication and encapsidation of poliovirus RNA.

Authors:  N Percy; W S Barclay; M Sullivan; J W Almond
Journal:  J Virol       Date:  1992-08       Impact factor: 5.103

7.  Towards identification of cis-acting elements involved in the replication of enterovirus and rhinovirus RNAs: a proposal for the existence of tRNA-like terminal structures.

Authors:  E V Pilipenko; S V Maslova; A N Sinyakov; V I Agol
Journal:  Nucleic Acids Res       Date:  1992-04-11       Impact factor: 16.971

8.  Specific interactions of HeLa cell proteins with proposed translation domains of the poliovirus 5' noncoding region.

Authors:  J R Gebhard; E Ehrenfeld
Journal:  J Virol       Date:  1992-05       Impact factor: 5.103

9.  Cell proteins bind to a linear polypyrimidine-rich sequence within the 5'-untranslated region of rhinovirus 14 RNA.

Authors:  I A Rojas-Eisenring; M Cajero-Juarez; R M del Angel
Journal:  J Virol       Date:  1995-11       Impact factor: 5.103

10.  Detection of enteroviruses in groundwater with the polymerase chain reaction.

Authors:  M Abbaszadegan; M S Huber; C P Gerba; I L Pepper
Journal:  Appl Environ Microbiol       Date:  1993-05       Impact factor: 4.792

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