Literature DB >> 28388169

Multisystem altruistic metadynamics-Well-tempered variant.

Petr Hošek1, Pavel Kříž2, Daniela Toulcová1, Vojtěch Spiwok1.   

Abstract

Metadynamics method has been widely used to enhance sampling in molecular simulations. Its original form suffers two major drawbacks, poor convergence in complex (especially biomolecular) systems and its serial nature. The first drawback has been addressed by introduction of a convergent variant known as well-tempered metadynamics. The second was addressed by introduction of a parallel multisystem metadynamics referred to as altruistic metadynamics. Here, we combine both approaches into well-tempered altruistic metadynamics. We provide mathematical arguments and trial simulations to show that it accurately predicts free energy surfaces.

Year:  2017        PMID: 28388169     DOI: 10.1063/1.4978939

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  1 in total

1.  Modelling Protein Plasticity: The Example of Frataxin and Its Variants.

Authors:  Simone Botticelli; Giovanni La Penna; Germano Nobili; Giancarlo Rossi; Francesco Stellato; Silvia Morante
Journal:  Molecules       Date:  2022-03-17       Impact factor: 4.411

  1 in total

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