Literature DB >> 28388165

Electrostatic interactions in dissipative particle dynamics-Ewald-like formalism, error analysis, and pressure computation.

Rakesh Vaiwala1, Sameer Jadhav1, Rochish Thaokar1.   

Abstract

An accurate time evolution of charged species having exponentially smeared out charge density (Slater type charge distribution) in dissipative particle dynamic (DPD) simulations necessitates the optimal choice of the Ewald splitting parameter (α), charge smearing length (λ), and real space cutoff (c) when the Ewald summation or its variant such as particle-particle particle-mesh or particle-mesh Ewald is employed for long range electrostatics. The present article offers the error estimates in the electrostatic energy and the force as a function of α and β(1/λ) on account of spherical truncation c in real space. These error estimate formulae are validated by our DPD simulation results. We also give here an Ewald-like derivation for electrostatic energy and force for the Slater type charge density. A quick estimate of the electrostatic pressure without the use of the tedious expression which involves three dimensional Fourier transforms is also presented, and its range of validity is discussed. The basis for the proposed formula for pressure is the fact that the minimum-image truncation in many cases allows one to compute the thermodynamic quantities with reasonable accuracy.

Entities:  

Year:  2017        PMID: 28388165     DOI: 10.1063/1.4978809

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Dissipative Particle Dynamics Simulations of a Protein-Directed Self-Assembly of Nanoparticles.

Authors:  Chunhui Li; Xuewei Fu; Weihong Zhong; Jin Liu
Journal:  ACS Omega       Date:  2019-06-12

2.  Interactions and effects of food additive dye Allura red on pepsin structure and protease activity; experimental and computational supports.

Authors:  Fatemeh Balaei; Mohabbat Ansari; Negin Farhadian; Sajad Moradi; Mohsen Shahlaei
Journal:  Res Pharm Sci       Date:  2020-12-30

3.  Rhamnolipid Biosurfactants for Oil Recovery: Salt Effects on the Structural Properties Investigated by Mesoscale Simulations.

Authors:  I-Chin Chen; Ming-Tsung Lee
Journal:  ACS Omega       Date:  2022-02-08

4.  Systematic Parameterization of Ion-Surfactant Interactions in Dissipative Particle Dynamics Using Setschenow Coefficients.

Authors:  Ennio Lavagnini; Joanne L Cook; Patrick B Warren; Christopher A Hunter
Journal:  J Phys Chem B       Date:  2022-03-15       Impact factor: 3.466

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.